BtaINT0048011 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94587270-94588605:-
Coord C1 exon
chr11:94588534-94588605
Coord A exon
chr11:94587327-94588533
Coord C2 exon
chr11:94587270-94587326
Length
1207 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCAATTTTGAATACTGTAAAAACGAAAGCAAACCCGGCCATGAAGACTGTCTATAAGTTC
Seq A exon
GTAAGTACTGGTCTTGGTCTCGGGATCCACACAGATCTGTTCCTGAGCATGACGACAAAACTCTTAGACTGAACCCTATGTTGCAGAGCTGATTTGGGGGCTGCTGTGTTATTTCCTAAAGCTCTCAAAACTCTCAGAATTGTTTAGCATTGATGTTTTATGACCAGGTCAGTGACGTTTTTTCATTTAAAATGTTTCTGCACACAGTGGCTGCAATAGAGAAATGGGCGGCTACTTGTTTTAGCTTTTCAGATGTAGATGGGGTGGCTAAAATTCCAGTGCTCCATCCAGAAGACCCAGAGGCTGTGGTCTGTCGGGTGTTCTGGTAGACCTTTCCTGTGTTTATCCTCGCTATTATGTCAGAATAAAGCAGCTGCTCTGCAGGTTACTGAAGAATGCTCGTGGTGGGACACATGCCCATTTTTTTGTCCCAAATTCTTCATCATCTCTCTCATCACTGCCCTATAGGAAATGCATTGTTTGTGAAACTTGTGCCCACAGCAGAGTGAAAATAAGAGAACACGCCGGTTCCCGATGCTCCATCTTTTATGAGCCTCAAGTATTTTTTCTCATGGTTTCTCCTGCTTCCTAATTTGACTCCGAGACACTTACCTGGGGTGGTTTTGTTTTATTTCCATTTTTAATTTTGTTAGTCCTTTCTGTGCTTAAATAGTAATTATTTTAATAGGGTGGGTAGCTGCCAAGAGAACCGCACAGGTCGTAGAATGACAGAAAGTCAAAGCCAGGGTGTCTGCTGAAATGAAATTTAAGAAATGGCATCAGAGAAACCCAGCAATGTGTCTGTTTGGCCTGGGCAGAAAATTGGTCCTGAAGCCCTGCCCTGGTTAAGCGTAGTGGATATTCTGAACCTTGCAGCTGGAGAAGCTGCTGCTCTCCTCTTACTGGTAGCTGTCGCCAGGCTGCAGAGATAAATAATTACAGAGAGCAGAAGAAGAGCTTCAGAGGTGGGGAAAAATCAGTGCCATCAAAATGCAGAAAACAAAATCTGTGTAGCCTCTTTAAGGGCTTTTTTTTAACCTTTCAACATTGTATTTGTTTTCATAGCCATTATATTTTCAACTTGATGATCCCATTTTCCTTCCTTTTTCTAGTAATCAGAGAAGGTGATTCACGATGGACTGAAATCAAGCACAGTCCCTGCTGGAAACAGAAGGGGAATCTTAACTTAAATTAATTTTTCATGCAG
Seq C2 exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610:ENSBTAT00000061512:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development