DreINT0008825 @ danRer10
Intron Retention
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8362572-8363407:+
Coord C1 exon
chr21:8362572-8362643
Coord A exon
chr21:8362644-8363350
Coord C2 exon
chr21:8363351-8363407
Length
707 bp
Sequences
Splice sites
5' ss Seq
TTTGTATGT
5' ss Score
2.51
3' ss Seq
AAATCTCTCATCCTCTGCAGGCC
3' ss Score
8.71
Exon sequences
Seq C1 exon
AAAGGCAGCGGCGCAATTCTGAACACAGTGAAGACAAAGGCAAATCCTGCAATGAAGACAGTTTACAAATTT
Seq A exon
GTATGTATCCATTTGTGTATTTGTGTGTTCTTGTGTAATATTAATAAATTAATTTATTTTTGTTTTATTTTGTTAACTTTATTACTATTTAATTTATTAGTTCTTCCCATGTGAGCGAATTACCTCTTTGAAGTTTCTCTGTGATTTTATTGTTTGTTTGATAATTTATTTAAATTATTTACTTATTAATTTTGAATTCTTATTCATTTTTATTGAACTATTACAAAAAAATTAATTCTTATTATTTAATATTATTTAAAGATCGCACTATTATGTCTTTCTTTTCTTTTTCATTCCTTTAAAAAATGTTCTATCACAATTTAATCTGTTTTTAATAATTTTTATTTCATTATTTCTTTAATTCTTGTTTATGTAAAGCACTTTAAATTACCATTGTCTATGAAATGTGCTATATAAATAAACTTTCCTTGCCTAATTCAATGTACTTATTTTATATAATTTTTCATGGCTTGAATTGTAATTTAATTAAATTTTTATTTTAAATAAAATTTTTATATTTTTATATATTTTTGTATTTTAAATAATAATTTTTAACTTTGATTTTCAAATCTTTTTAGTTATTTTATGTAATTGTATATTTTTATTTATTAGTTTGAGCGAATTTTGTTTTATCAGTGTGAGTAAACAGCAACAATTTCAAAAGATTTAAATGTGCAGTTTATAAGCAAATCTCTCATCCTCTGCAG
Seq C2 exon
GCCAAAGACCATGCCAAGATGGGCATCAAAGAAGTCAAGAGTCGACTCAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592:ENSDART00000143151:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]