MmuINT0048202 @ mm9
Intron Retention
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37707916-37709584:-
Coord C1 exon
chr2:37709513-37709584
Coord A exon
chr2:37707973-37709512
Coord C2 exon
chr2:37707916-37707972
Length
1540 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
Exon sequences
Seq C1 exon
AAAGGAAGTGGTGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
Seq A exon
GTAAGTACTGGGTGAAGTCTGGAAGCCATGGATGGGTTCCTTCATAAAACTAGACTCTTCTTGTTTGTTTCTGTTTTGTTTGTTTGGGGGTTTTATGGTGGTGGTGGTGATGGTGGTGGTGGTGGTTTGGTTGGGGTTTCTCTGTTGATTTGGTTTAGTTTGTTGTTGTTGTTGCTGTTGTTGTTGTTTTTGAGACAGTCTCATCATATAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTGGCCTCAAACTCGCAGAGATTCCTCTGCGTCTTCCTGCCAAGTGCTGGATGTATGCCACTATGCCTGATACAACTTGACTCTCAAGTGTATCAAGACCTCGATTGCAGAAGTGGCCAAACGGTGGCCATGCCATTTCTTAGCAGTCTCAATGTTCTGAGAATTGATTGGCATTGCTGATTTATAACCAGGACTGTGTGTGTGTTGAAGAGATGACCCCTCATTTTTAACTTCCCCATGGCAGGTTATATGTATGGTTATATACAGGAAGTGTAGAGACCAGAGGATTGGGAAGCTGTCTGTTTTATAACCATGGGCACAGTGGGGAGAACACCCTCAGTTTTGTCCCGATTCTTCATCCCCTTTCTTACCATTGTCCTATAGGAAGTGTGTTGTGAGACGCATGCCCACAGGAGATACATCTGTTCCTGACTCCATCTCTCACAAACCTCAAGCATTTGTTCTTGTGTTTTTCCCTACTTGCTTGTTTTGACCATGAGCCACATACATGGGGTGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTATCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGAAACTCACTTTGAAGACCAGGCTGACCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGCGTGTGCCACCACCGCCCAGCTTATTTTTATTTTTAATCGTGTTAGTATTTCCTGTGCTTAAACTCTAGTTCCCATACTGGATGAGTGGCTACCAGCAGAGATGCGCAGGTCAAAACTGGCAGAAAATAGAAGCCAGGGTGTCTTCTAAAATGAAATTTAGGAAATGGTGCTATAAGAACCTAGCAACTGCTTTGTTTCAACCTGGAAAGGTGATGGACCCTGAGGCCTGGCCCTGGTAAAGTATAGTGGGGTTCTGAGTCTTGTGACAGGTAAAGCTACTGTTCTTTTACTGGTAGCTGTCACCAGGCTGCTGAGGTAAATAATTATAGAGAGCAGAAGAAAGGCCTGGGAAGGGAAAGAAGAAAAACAGTCTCTGCCATCAAAATGCAGAAAATGAAATCTCTGCCGCTCCTTTAAGGGATTTTTTTTAAGCCTTTTACCTTAGTATTTGTTTTCATGGCCATTATATTTTTCAACTTGATGATCCCATTTTTTTCTTCGTTTTTCTAGTAATCAGAGAAGGTGATTCATGGTGGACTGAAATCAAGCATAGACCCGGCTGGAAACAGAAAGGGAATCTTAACTTAAATTAATTTTTCATGCAG
Seq C2 exon
GCAAAAGATCATGCAAAAATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392-Dennd1a:NM_146122:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: