GgaINT0124169 @ galGal3
Intron Retention
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9771092-9772273:-
Coord C1 exon
chr17:9772202-9772273
Coord A exon
chr17:9771149-9772201
Coord C2 exon
chr17:9771092-9771148
Length
1053 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCCATTTTAAACACAGTAAAGACCAAAGCTAACCCTGCCATGAAGACTGTCTATAAGTTC
Seq A exon
GTAAGTACCAAGTATTGGCTTACTACTGAGATAAGAGTCTAATTATAATCCTGTTTTAACCTTTCAAATGAAACTCAAGGCTTGAATTCATTTTCTTGGACTCAAAAAATTATTTAAAATATGTATTCATTTCAATTTCAAATTTAAATAGAAAAGTCATTTTGAAATTTAAACATAATTGAAATGCAGTGGAGAATGAGAACATGTGATTTCTTTTGTAAGTATAGATGATACATTCTATTTATTGAATACAACTATTTCTGGAAAATAGTGGCTATGTACTCTGCTAAGCAGCTCTACCATCTCATCATTACTCAGTTGGAAATCATTGTTACCTCAGGTTTCTCCGCATGCAGTTTCATCGAAATAAGGGAATCCTCTCATTTTCCAAATTGTTCCATCTTTTCTAAATGTCAATTAATTTTCCCTAGAGATTTCTTATGCATACTTATTTAGAGTCCAACTTACTGAGTTATTCTTTAAATGAAAATGTTTTTGGTTCTGTTAACAAACAGTAGCATGTTACTGTATTGTCATGTGTGGCTGCCAGTTTCACTGTGCAAGGTAAAATAGCACAGAAACAAGTGCGGATTTCTTCTGTGAGCTCAGTTTTAGGAAATAATGCTACAAAAAGCATTGAGATAACTATTTTTCTTTTCCTGCTTTTCTCCAACCTGAGAGAAATGAGTAGGATGAAATTGGTTCTACTAAATGGAACAGACATCCAGGAAGAAGTTTGCAGGTATTGATCATTAACCAGTAGCAAAGATAAATAGGTAGGGGGAAGGACAGAGGGTGTAGAATGTGAAGAGATGAAAGATGCCTCTGGCATCAAAGCAGAAAGCAAAATTTCTGTAAAATTGAATGTATGCTTAGTATTTCTTTATTATTGTTTTAGCTTTCTATTTGTTTCAGTATGTTTTCAGTATCAGTTTCAATTTTTTCCTTGCCATTTTTAGTAACCAGGGAAGGTGAATCTTGATGTACTGATATCAGGCATAGTTACTGCTAGAAATAGAAGGAGATTTTAACTTAAATTAATTTTTCATGCAG
Seq C2 exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAAGTGAAAAACCGCTTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157:ENSGALT00000001740:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]