RnoINT0046412 @ rn6
Intron Retention
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22113971-22115580:-
Coord C1 exon
chr3:22115509-22115580
Coord A exon
chr3:22114028-22115508
Coord C2 exon
chr3:22113971-22114027
Length
1481 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
Seq A exon
GTAAGTACTGGTCAAAATCTGGAAGCCATGGGTGGGTTCCTTCATGAAACCAGACTCTTTTTGTTTGGTTTGTTTGGGGTTTTGTTGGGGAGGGGAGGTGGAGGAGGAGGAGGAAGTGGTGATGATGGTGGTGGTGGAGGAGCAGGAGAAAGAGGAGGAGGAGGAGGTGGTTGTGGTTGTGGTGGTGGAGGAGGAGGAGGTGGTAGTGGTTGTGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGGTGGTGGTGGTTTGGTTGGGGGTTTTTGTTGTTTGGCTTGATGTTTTGTTTTGTTGTTGTTGTTTGTAACACAAGGTCTCACTATGTAGCCTTGGCTTTCCTGGAACTCACTATGTAGACCAGGCTGGCCTCAAACTCACAGAGATTCCTCTGCCACTTCCTCCCAAGTGCAGGGATTAAAGATCTATACCACGATGCCTCATAGAAACTGACTCTCAAGCGTATCAATGCTTGGGTTGCAGAAGTGACTTCAGGGTGGCCATGTCATTTCTTAGCAGTCTCAGTGTTCTGAGAATTGCTTGGGATTGCTACTTTGTAACCAGGACTGTGTGCATGGTGTGGAGATGACCCCTCATTTTTAACTTCCCCATGGCAGGTTATATGTATGGTTACATACAGGTAGTGTAGAGGCCTTGGGAAGCCTGCCGTTTTATAACCATGGGCACAGTGGAGAGACCACCCTCAGTTCTGTCCCAAATTCTTCATCCTCTCTCTTACCATTGTCCTATAGGAAGGGTGTTATAAGACCCTGCCACAGGAGACACACGGGTTCCTGGCTCCATCTCTCCCAAGCCTCAAGCATTTATTCTTGTGCTTTTTTCTACTTGCTTGTTTTGACCCCAAGCCACATACATGGGGTGGTTTTACTTTATTTTCATTTTTAATTGTGCTCTAGTTTCTATACTGGATGGGCGGCTACCAGCAGAGATGCACAGGTCAAAACTGACACAAAGTAGAAGCCAGGGTGTCTTATAAAATGAAATTTAGGAAACAGTACTATAAAAACCTAGCAACTGCTTTGTTTCAACCCTTCAATCTGGAAAGGAGATGGACCCTAAGGCCTGGCCCGGCCCGGCCCAGCCCAGCCCTGGTGAAGTATAGTCGGGCTCTGAGTCTCGTGACAGGTAAAGCTGCTGTTCTTTTACTGGTAGCTGTCACCAGGCTGCTGAGGTAAATAATTATAGCCAGCAGAAGAAAGGCCTGGGAAGGAAAAGGAGAAAAAAGTCTCTGCCATCAAAATGCAGAAAATCAAATCTCTGCAGCTCTTTTTAGGACTATTTTTAACCTTTTACCTTTGTATTTGTTTTCACAGCCATTATATTTTTCAACTTGATGATCCCATTTTTTCTTCGTTTTTCTAGTAATCAGAGAAGGTGATTCATGGTGGACTGAAATCAAGCATAGACCCGGCTGGAAACAGAAAGGGAATCTTAACTTAAATTAATTTTTCATGCAG
Seq C2 exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526:ENSRNOT00000025443:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]