BtaINT0049345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47111040-47112438:+
Coord C1 exon
chr13:47111040-47111159
Coord A exon
chr13:47111160-47112323
Coord C2 exon
chr13:47112324-47112438
Length
1164 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CATCCCTTCTTTCTGTTTAGGGT
3' ss Score
11.74
Exon sequences
Seq C1 exon
CAAAAGTGGCCTGTGTCAAATCCCGGGACATGCACTGGGCCTTGGTGGCGCACAGGGATCAGAGAGACATCAACCTCTCCTCTCTCCGGATGCTGATAGTGGCCGACGGTGCAAACCCCT
Seq A exon
GTAAGTGAAGGACCAGGCGGGCAGGAGGAACCTCATTCCCGGGGCTTTGGTTTTCCCTTTCCTAGTGTTCATCTTAGTGAAGGAGAGTCTTACCAGGGCCTCAAGGCACCAGGGCCTGAAGGTCCATCCACAGCCCTGGGGTGGAGTCCTGGCTCTTCTCCTTCCTGATTCTGAGGAAAGGTGACATGTTAAATTCTTCTCTTTCTTTTAGCTGCAAGACGGTACCCAGTCATCAGATATGCAGCAGTCCCTATGTATAGTTCTCAAGTGCTCAAGAAATACTAATTATGATTATTTTATGGTCCATAGCAGGTTTATTGATCAGGAAATTTAATTTGTCATTTTTAATGGAATTTCATTATCAAATTCTGTACTGGAAACTACCTGGGTAAAATAAATGAGCAATTGCACAGAATACTATTAATATACCTTGAGAACTATTTCAGTCAGTTGAAACAGAAACTCTGTTAGCTTGTTTTTCATGAGAAGAGCATATAAGCTAGAAGCAAAGTGAATGAATGAAAATGAGTGAATGAATGTTTCTGATCACATTGGTAAACTTTGCGGCATCTGTGTTTCTAAATTAAAGCATCATACACTTAAAGAACATCTGATCTGCAAACAGATAATTTTGTATATTAGTTTTATAAGTGATTCTTCTGTTTATAGTAGAACTCCACAAATTGTGAGCTGTTTAATACACAAATGGTTTTACCCATAACTCTGCAGAGTAATAAGTCTTAAAAGAAGCAAGGTAAACTTGTATTGGGGACTAGTTTAGCAGATAGGTTCCTAATAACTGTATATCTTGATCTCATCACTCATATTAATATAGAGGAATGTTTTCTTCATTTAGTTGGGTTTAGAGTTCTCTCTTGGAACATGCATGTGAAAAATGGTGGAACAAGTCTCAGAAAAGTTATTAAAATTAAGTTCTTCAGTTAGAAAAAATGTATGGTTAAATATAGAAGTTGCATTTTTTAAATTCTTGAGTTCTGTGTTTGAGAATAATATTAGCTTTCATTGTAACAGATGGTAGGTTAAGTTAAATGAAGTATTTGTCCATGCTACCTAATTCCACATGTGCCTAAATTGTAACCTCAAAGGCATTTTATATTACGGGATATTTTTAATTGTCCACTGTCATCCCTTCTTTCTGTTTAG
Seq C2 exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAACGTCTTCCAAAGTAAAGGTCTACGCCAGGAGGTCATCTGCCCCTGCGCCAGCTCACCAGAGGCTCTCACTGTGGCCATCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531:ENSBTAT00000015282:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGCCTGTGTCAAATCCC
R:
CCGGATGGCCACAGTGAGAG
Band lengths:
230-1394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development