GgaINT0100236 @ galGal4
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9970409-9971428:-
Coord C1 exon
chr2:9971309-9971428
Coord A exon
chr2:9970524-9971308
Coord C2 exon
chr2:9970409-9970523
Length
785 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTTTTTTTTCCTTCCCTCAGGGT
3' ss Score
12.99
Exon sequences
Seq C1 exon
CAAAAGTTGCCTGTGTAAAATCCAGAGACATGCACTGGGCATTGGTGGCACATCGAGATCAGAGAGACATCAACCTCTCCTCACTGCGAATGCTCATAGTGGCTGATGGTGCCAACCCAT
Seq A exon
GTAAGTGATGCTTCTGCAGTCCATCAAAGAACAGGGAATGTTTTTCATCTTGCATCTAAAGTTTCAATCTTCAATCACCGTAGCTAAAATATTTAACAAAGTATAAGGTTTGTCTACTGCAAACTGTTTGATATTTACTGAAACAGTACTTAATTTTGAATTTTTTTAAATATATTTTTCTTTAGCTAATCCTGAAGCAAACTTGATATTCCGCATAACGTAAGTTGCAGCAAATCCAGTTTTGTTTAACATGACAGCCGTGTACAAAAATGGAAGTAAATAACCTTAAGTTGTAGAAAGGATCAAAACATTTCTTCTATGGCTCTCAGATACAGAATGAACTGAGAATTTTAGGGGAATACCTATGCTGGTCTTGAGAACCACATCTGGATCACTATGTGACAAGTACTTGTAGAAACTGTTTTTCTTCACTGTTTAAGATATCAAGGCATAGGTGTTTTCCTTTTTGTAGTGGCTTGCTTTGGGTTTCTGAATTAAATCTTTAATTTGCCTCACCCTAAAAAGAAAAATTGTAATGACATTCATGTTATAAATCTGGCATTAATGGCTTTTCTGTGTAAGCAAAGTGAAAGGATTTTATGGTAAAAAATGAGTATTTATTCAATGTATGCACATACATATAGTTGTATCAGGTAAGGCTTCTTTCTTAGTGGGTTCTTTTTAACTTTTTCATTCAGAAAAGCCTAATATATTGAATAATAAGTTTGCAATTTGAATAGCATCACTTTAGAAATCAGACTATGATTTTTTTTTCCTTCCCTCAG
Seq C2 exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAATGTCTTCCAAAGCAAAGGTCTGAGACAGGAGGTCATTTGTCCCTGCGCTAGTTCACCAGAAGCTCTCACTGTGGCTATCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.7=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(0.3=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGCCTGTGTAAAATCCAGAGA
R:
TCGGATAGCCACAGTGAGAGC
Band lengths:
230-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]