RnoINT0047775 @ rn6
Intron Retention
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63715322-63716786:+
Coord C1 exon
chr17:63715322-63715441
Coord A exon
chr17:63715442-63716671
Coord C2 exon
chr17:63716672-63716786
Length
1230 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTGTCCCTCTTTCCCTCCAGGGT
3' ss Score
12.58
Exon sequences
Seq C1 exon
CAAAAGTGGCTTGTGTGAAATCAAGAGACATGCACTGGGCACTTGTAGCACACAGAGATCAGAGAGATGTCAACCTGTCCTCCCTGCGCATGTTAATAGTGGCCGATGGAGCAAATCCCT
Seq A exon
GTAAGTGAAGCATCACTTGTAGATCCTAAGATGGGAAGCCGCAAAGCTCTTGTGTTCCACATGCCTTTCTTGTCACTTTCATGCTTTGATTTTTCTAATCTGTATCTTGGTTGAGACTATCTTAAAATAACCAAGCAGTGTTCTCCTTAAAGACAGGATAACAGTGGTTAAGGACAAAGGTGTTCACAGTCTGTAGGCCTGAGTTAAAGAAATATCCAGGTTCTATAGAGACAGTTCCTTTCTGAGTTTTGTTTTCTAAACTTTGCAGTGGTAGTCAGATCATAATGCTGAAGGATTAAATGGGCCAATCTTCAAGTCTAGTACTTTGGCATAGAATAAAAGCTCAGGAAGTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGGGGAAAAAAAAAATTAAAAGCTCAGGAAGTACTATTTTATGGTCTACTGTACAACTGAGCAGTAAATTAAGTTTTCATTTAATAAAACTTCATTATAAAATACTTTAAAGCTCAGATAAAATAAGTTAACATTTCTTTAAAATATCTTTTATATGTCCTGAAATAACTTGTTTTTTTGATAGGAGTCTATAATATCAGAAGGCATGAGTCAGAAGAGAATTGAATGAAAGACTGTTTCTGACATCATCTATAAACTATGCTTAGCTGTATTTGTAAACTAAAGCAGGCTATGTTTTCCTGATGACTGGTGGGTGAAAGTGAACTTAGAAACAGATAACTTAGTTTAAAAATGATTCCTTCATTTTTAAAACAATTGGTTAGACTGTGAACTAATTAATTATTTTTAATACACATCACAGATCTTAAAGTAAATTTGTATTTGAAAGTCATGTATTTCATAGGATCTTAGTAATTAACGCAAATTCATTTAAGAGAAGTTTCCTTTGTTTTGATTGAGATATTTTTCTAGAACCTGCATACTGAAAATTGTAGACCAGGTTTCAGGGAGTTAATAAAGTAAATTCACTAGTTAGCAAAAATGTCTTACCTGTAGAAGTTTTAGTTTTAAATTCTTTTCTAAAGGTTTGCAAATATCTTTCAATATAGCATAAATAATTGTAGTAAATGTTTTGTTCTCCATACTGTCTGTATCCAAATTTCAAGAATAATTTTCTATTGTGGGATTGTTTTAAGTCAGTCACAGTGTTACGTTTGTCTGACCATTGTCCCTCTTTCCCTCCAG
Seq C2 exon
GGTCTATTTCTTCTTGTGATGCGTTTCTCAATGTCTTCCAGAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCCTGTGCCAGCTCACCAGAGGCCCTCACTGTGGCAATCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288:ENSRNOT00000020634:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTGTGTGAAATCAAGAGA
R:
CTCCGGATTGCCACAGTGAG
Band lengths:
231-1461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]