GgaINT0100236 @ galGal3
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9930509-9931528:-
Coord C1 exon
chr2:9931409-9931528
Coord A exon
chr2:9930624-9931408
Coord C2 exon
chr2:9930509-9930623
Length
785 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTTTTTTTTCCTTCCCTCAGGGT
3' ss Score
12.99
Exon sequences
Seq C1 exon
CAAAAGTTGCCTGTGTAAAATCCAGAGACATGCACTGGGCATTGGTGGCACATCGAGATCAGAGAGACATCAACCTCTCCTCACTGCGAATGCTCATAGTGGCTGATGGTGCCAACCCAT
Seq A exon
GTAAGTGATGCTTCTGCAGTCCATCAAAGAACAGGGAATGTTTTTCATCTTGCATCTAAAGTTTCAATCTTCAATCACCGTAGCTAAAATATTTAACAAAGTATAAGGTTTGTCTACTGCAAACTGTTTGATATTTACTGAAACAGTACTTAATTTTGAATTTTTTTAAATATATTTTTCTTTAGCTAATCCTGAAGCAAACTTGATATTCCGCATAACGTAAGTTGCAGCAAATCCAGTTTTGTTTAACATGACAGCCGTGTACAAAAATGGAAGTAAATAACCTTAAGTTGTAGAAAGGATCAAAACATTTCTTCTATGGCTCTCAGATACAGAATGAACTGAGAATTTTAGGGGAATACCTATGCTGGTCTTGAGAACCACATCTGGATCACTATGTGACAAGTACTTGTAGAAACTGTTTTTCTTCACTGTTTAAGATATCAAGGCATAGGTGTTTTCCTTTTTGTAGTGGCTTGCTTTGGGTTTCTGAATTAAATCTTTAATTTGCCTCACCCTAAAAAGAAAAATTGTAATGACATTCATGTTATAAATCTGGCATTAATGGCTTTTCTGTGTAAGCAAAGTGAAAGGATTTTATGGTAAAAAATGAGTATTTATTCAATGTATGCACATACATATAGTTGTATCAGGTAAGGCTTCTTTCTTAGTGGGTTCTTTTTAACTTTTTCATTCAGAAAAGCCTAATATATTGAATAATAAGTTTGCAATTTGAATAGCATCACTTTAGAAATCAGACTATGATTTTTTTTTCCTTCCCTCAG
Seq C2 exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAATGTCTTCCAAAGCAAAGGTCTGAGACAGGAGGTCATTTGTCCCTGCGCTAGTTCACCAGAAGCTCTCACTGTGGCTATCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGCCTGTGTAAAATCCAGAGA
R:
TCGGATAGCCACAGTGAGAGC
Band lengths:
230-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]