MmuINT0049613 @ mm9
Intron Retention
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9574608-9576164:+
Coord C1 exon
chr13:9574608-9574727
Coord A exon
chr13:9574728-9576049
Coord C2 exon
chr13:9576050-9576164
Length
1322 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTGTCCCTCTTTCCCTCCAGGGT
3' ss Score
12.58
Exon sequences
Seq C1 exon
CAAAAGTGGCTTGTGTGAAATCAAGAGACATGCACTGGGCACTTGTAGCACACAGAGATCAGAGAGATGTCAACCTGTCCTCGCTGCGCATGTTAATAGTGGCTGATGGAGCAAATCCCT
Seq A exon
GTAAGTGAAGCAGCAATTGTAGATTCTAAGATGGGCAAGCCTCAAAGCTCCTTGTTTTCCACTCGTCTTTCTTGTCACTTTAATGCTTTAATTTTCTAATCTGTATCTTGATTGAGACTACCTTAAAGTAACAAAGCAGTGTTCTCCTTAAAGACCAGGGTAACAGTGGTTAAGGACAAGGTGTTCACAGTCAGCAGGCCTGAGTCAAATACCCAGGTTCTATAGAGACAGTTCCTTTTTAAATTTTGTTTTCTCAACTCTGCAGTGGTGGTCAGATCCATAATGCCTGAGGATTAAATGGATCAATCCCCAAGTCTAGTTACTGGCATAGCATAAAAGCTCAGGAAGGACTGTTCTACGGTCTACTGTAGCTGGATCATTTGATAGTAAATTAGGTTTTCTTTTTCTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGGAAGTTTTCATTTTTTAACACAACCTTGTTGTTAAATACTTTAAAGCTCAGATAAAATAAGCTAGCATTTTCATAAAATACCTCTTATATGTCCTGAAATAGCTTGTTTTTTTTTTTTTTTGATAGTAGTCTACAACATCAGAAGCCACAAGTCAGAAGAGAATTGAATGAAAGACTGTTTCTGACCTCATCTGTAAACTGTGCTTAGCTATATTTGTAAACTAAAGCAGGATATTCTTTTCTGATGATTGTTGGGTGACAGTGAAGTAGAAACAGATAACTTAGTTTATAAATGATCCCTTCACTTTTCAAACAACTGCATAAACTATGAACCTAATTAATTACTTTTAATACACATCACTATAGATCAACTTGCATAAATTAAAGTAAATTTGTATTTGAAAGTCATATTTCATAGGGTCTTAGTAATTAGTGCAAATTAATTTAAGAGAAGTTTTCTTTGTATACATTTACAATGAAAGCTGTAGCCCAGGTTTCAGAGAGTTAATAAAGTCACTCCATCAGACAGGAAAAATGTCTTACATGTAGAAGTTGTAGTTCTAAAATTCTCTTTCTAAAGGTTTGCAAATATTACCTTTCAATATAACATAAATAATAAATTGTAATAAATGTTTTGGTTCTCCATACTGCCTTACTCTGATTATGTCTGAATCCTAACTTCAAAATCATTTTGCTATTATGGAATAATTTTAAGTCAGTCACAGTGTTGCACTTGTCTGACCATTGTCCCTCTTTCCCTCCAG
Seq C2 exon
GGTCTATTTCTTCTTGTGATGCGTTTCTCAATGTCTTCCAGAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCCTGTGCCAGCTCACCAGAGGCCCTCACTGTGGCAATCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-Dip2c:NM_001081426:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTGTGTGAAATCAAGAGA
R:
CTCCGGATTGCCACAGTGAG
Band lengths:
231-1553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: