HsaINT0048156 @ hg38
Intron Retention
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:382647-384146:-
Coord C1 exon
chr10:384027-384146
Coord A exon
chr10:382762-384026
Coord C2 exon
chr10:382647-382761
Length
1265 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTGTCCCTCTTTCACTCTAGGGT
3' ss Score
11.57
Exon sequences
Seq C1 exon
CAAAAGTGGCGTGTGTGAAATCGAGGGATATGCATTGGGCATTAGTAGCACACAGAGATCAGAGAGACATCAACCTCTCCTCTCTGCGAATGCTGATAGTGGCGGACGGCGCGAACCCCT
Seq A exon
GTAAGTGAGGAGCGTGTGATCTCGTGAGGCAGGCGGGCTGTGGAGTCTTTTTTTTTTTTTTTTCGTGAGGCAGGCAGGCTGTGAAGTCTTTTTTATTTTTTCCCCAGGTTTCATTCTTTGCACTTTGATTTTTCTTTTTCTAATCCTTATCTTAGTAAAGAAATTGTCTTAAAATCACCAAACAGTAATCACTCACTCGGGCCAAGAGGTACGATGGCATAATAAGGACAGGCATTTGTAGACTCCACAGCCCTGGGATTCAGAGGATGTCTTGATTCTGTAGAGAAAGTTCCTTTGCTGACCCTGTTTCCCCGGCTGTAAAACGGTGCTTAAGTCATAAATTTTCATGAGGATGAAGTGAAGTAAGCCCTAAGCAGGTAATAAGGAAATATTCAAGAAATACTTGACTGCTAGTACTTTTTGGTGTATAGTAGTTTTCTTGATCAGTAAATTAATTTGTCGTTTTAAATGTAATTGCGTTATCACATCCTGTAACAAAAATACCCAGTTAAAGTAAATTAGCAGCTCCACAGAATACTATAAATACACCTTGAGAAATATTTCAGCCAACTGAAACAAGAACCTAGCTAGCATGCTTTTGTGAAAAAAGTACATAAAGCTTCAGAAGCAAAGTGAAATTAAAGGTATCTGACCACATTTATGAAACATGCAACGTTCATGTTTGTAAACTAAAGCAGCATAAACTCCTTTAATGCCTGATATACAAAAGCAGACTCATAAACAGGTTTTATAAACAGTCTTCACTTATAGAATTTCATAAATCCTGAGCTAATTTAATGAACAATTGGTTTTAACCCATAAGTACAAAACAATACATCTTGCATAAAGAAAAGTATATCTATATTTGGAGATAGTTTAGCTGATATGTTCTTGATAATTGTGCCTCGACCTCATCATTTAAATTAATAGAGAGGAAAGTTTTCTTCATTTGGTTTAGATTTACCCCTGTCTTGGAACTTCTGTACTGAAAATGGTGGAACAAGTCTCAGAAAAGTTACTAAAGTAAGTTCATCTGTCAGAAAAGGTGTCATAAATGTGGAGGTTGCATTCTTTAAATTCTTGAGTTCTGTTTGAGAATAACCACTTTCAGTGTAACATAAATAATAAATTGTATTAAATATTTTTCCACGCTGCCTAGATCCACTTGTGCCTGAATCCCACCTTCGGAACTATTTTCTATGGTGGGATTTTGTAATCAATCACAGTGCTTCAGCTGTCTGATCATTGTCCCTCTTTCACTCTAG
Seq C2 exon
GGTCTATTTCTTCTTGCGATGCATTTCTCAATGTCTTCCAAAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCTTGTGCCAGCTCGCCAGAGGCCCTCACTGTGGCCATCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240:ENST00000280886:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGCGTGTGTGAAATCGA
R:
CTCCGGATGGCCACAGTGAG
Band lengths:
232-1497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development