BtaINT0050794 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31047432-31049713:+
Coord C1 exon
chr19:31047432-31047558
Coord A exon
chr19:31047559-31049560
Coord C2 exon
chr19:31049561-31049713
Length
2002 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GACATGCTCTCCACTTATAGGTT
3' ss Score
9.83
Exon sequences
Seq C1 exon
GCTGTGCCTGTGTGAGAAGGCCCTGGTGGAGTACCTGGACACAAAAAGGCTTGCCTTCCCCAGGTTTTACTTCCTCTCCTCTTCTGATCTTCTAGACATTCTTTCCAATGGCACAGCCCCTCAACAG
Seq A exon
GTAAGCGGGGAAGTGCTTGTAGAAAGTCAAAAGGCTTGAGATGCTCCAGCAGGAGAGTTTCAAGTTCCCCATTATGCCCCATTAAGCAATGTATCCATTTGACCTATGTTGCCATCAGCACGGTCCCTAAGCTCATCTCTGGCTACCTGCTTTTTTTTTTCCCCTTAAACCTTTCTAGGTAGCCCAGTTTCTTTCCAGTTGGATCTCTGTAGAGATTTGATTTTGATCTGTAGAGATCAAATTTTGATCTGTAGAGATCAAAATTTAAATTAAATTTTTGAAAATTTCTGTATGCTTGGATGCTTGCTTTATCTTTCTCTAACACATGATGAGGTTTTTGTTCCCTTTCTAAAAACTGGGGCTTTCATTATCTTGGAAATGTTTTCTTTCAGTATACTTTTGCATAGTATTTCTTTTTTTTCTTAGTTTTTTTTTTTATGTGGACCATTTTAAAAGTCTTTATTGAATTTGTTATGATATCGCTTCTGTTTTACGTTTTGGTTTCTTGGCCATGAGGCATGTGGGATCTTAGCTCCCTGACCAGGGGTTGAACCCATACCACCTGCATTGGAAGGTAAAGTCTTAACCACTGGACCGCCTGAGGAGTCTCTACATGGTATTTCTATCCCGGTTATGTGGATAATTTTTTCCCTCTGATTCATCATATTTCCGTAGGTTGAGATTATTATCTTCATCTGTTCATACATTTTTGTACATACTTATACACTTCTTTCTCTCTCAGTCCTCTTCCTTGGCATTCTTCCATGTCCCTCAGATTTATCCACGTCCCTCAGATTTATCCACCATATTTAAGTTGTGTGTTTTTATTTGGTCCTTTTGTGTTGCTAACACTGTTAAAAACTACACTGTACCATTTGTTTTCTTTATTTTTCTACCTCTACCAATTCTTCTTATCTTCTACCTCAAATTTTATAGAGTTCATGTTTCTTTCATTTAATTGAAAGCAAAACAAGGTGATATTTTTTCAACACTACTTCTGTTTCCTGTATTAAGCTTCTAATATATACAGATGCTTTTATTCTAGTTCTTGAGTCTGGCTTTCGCCTTCTTTTAAGTTGTGGGATAATTTCACAGGTCTTGTGTTAATTGTTTGTTCTTGTATAAAGAAAAGTCTTTCTCTATCATTTGTTCCAAGTCCCTGGGTGGGATCTCCTCCAGCACCTTCAGTTTACTTCAATACTCTTAGAATTTCTCCCGCCATCTCATAAGTGAGAGAGCTCATTGCCGTAAACATAAGGGTTAAAACTCACAGTTTTCAGGAGGCCCCTGTATTTCAAAAAAGCTCTACCTGAGGCAGCTTCCTGTTTGTCATTTCTTCTCCACCTGCTGTTCTTCTCACTGCAGGACCACAGTATGGTTCTGTCTGGCACCCTCCTAGGATTACTGCCCAAGGCATCACTGCCTCCGTATCATGAGATGCCATGCTTGGGAGAAGCTCTGGCACAACCAGGCTTTCTGCCTGGTGTGAGTTTGCTGGCCCTTGATGTGGACCCTCCAGAGGCTGGTCTCCTGCCTCAAAGTGGTTCCTACATCTGAGTGACTTCTTCCACAGGCCATGGTCACCACTGCCCTTGATCCTCCAGATTTGGGCATGTTAGCAGCAGCAGCAGCATTCATCTGTAGACTCTCCTGTGCCTACCCTCCTGCAGCACAGTAGTGTTTTCTTAGGAAGAGGGCTTATGAATTAGTTATTGCTCCAGTCTGTTCCCATCCGTAGTAGATTAGGCAGAAATTACTCAAACCTTTGTGGCTTCGTTGGTTTGTAGTTAACGCGTGTTGCCCACTAGATCTATATTCCCTTTTATCCAGTCCAGCTAAATTCCATCTTCACATCTTCATCATTCCCTAGCTTCCTTCTAAACGTTTGGTACCCAACACTTTAATGGTTGTCACAGGGTAGCCCTTTAAGCAATACAATAATAATAAGTAGCTTCTAAGCAATAATCATAAGTGACTTCCTGGACATGCTCTCCACTTATAG
Seq C2 exon
GTTCAACGCCACCTTTCCAAACTCTTTGACAATATGGCCAAGATGCAGTTCCAACTGGACGCCAGTGAGAAGCCAACCAAGACCAGCCTTGGCATGTACAGCAAGGAAGGAGAATATGTGGCCTTCAGCGAGCCCTGTGACTGCAGTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development