GgaINT0127353 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1044436-1047508:+
Coord C1 exon
chr18:1044436-1044562
Coord A exon
chr18:1044563-1047355
Coord C2 exon
chr18:1047356-1047508
Length
2793 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTCTACAATTCTGCCTGCAGGTA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCTGTCACTGTGTGAGAAGGCTTTGGCTGAATATTTGGACAGGAAGAGGTTGGCCTTTCCCAGATTTTACTTCATTTCTTCTGCAGATTTATTGGATATTCTTTCCAATGGCACCAACCCACAGCTG
Seq A exon
GTAAGCATCGCTCTGTGTCATCTTTGCAATTCCAGCTGTCAGTGATATCACAGCAGAAGACCACGTTCTGGGACTCTCCCGTGGCTTATCCCTTCTTTGAGTGCTTTTTCTAACCTCCCTTACGTGGTTAAATAATAATTCCTTCACAAGTGAACTTCATCTGTCATCTCTGAAAGCCAGTGCACACTGTGTTGTCAGATGTAACCCTGGCGAGGTTTGCAGATGGTTCTGAAAACATTGCTCAGAGCAGGTTTTGTCTGTGTGTTGATGGTGCCAAACCACTGGTGGTGGGTGAGCTGTGGAGAGGAAAATATCACTCTCAAAGATTCCGCTAGAACTTGTTGCTGACCCGGGATCCCCAGGCTCAGGTGCCACCTGCTGCTGGAAGAGCTGCAGACAGAGCACTTAGAGGTGGAAGGAGATGTCCCTTCTGACACAGAAGAGTCATTTTGTTATTCAGCCACTTCTTCCCAGAACAGAGACCTTTGGCGTGCCCTCGTTAGAGGGGAAAAACACAAACTGAAGGAGGCAGGACAGCTGGTGACCAGACAGTGACCATGGCCAAGGCAGGCAGATAAATCTCCTGGTTGCTCTCCATCCCTGCACACCTCAGGGTGCAGGCTGGACGACCAACCTCTTGCCCTTTCCTGGGCTTTCTGACCAAGGACATTTCTTTGTTCCAGTCTGAGTTTTGGAATGCCAGGTATGGGGAAGTCCCTTGAAATGCACAATTCCTCCTGTTTACTTGTAGTGGGGGAACTTCTAGTTACCTTCCTATTTTAGGAAATGACCTCCATGTGTGCTTTTCCTGCACTCCCCAGATGAGCACAAACTCTTCCTTTATCGTAGTGGGCAGAATTTGGTGGAAGTTTCGCCATAAGGAGCAAAGCAGTGCTGGGGTTGTTTAGTGGTATGGGAGCACCCTCTGGAAATGGGGGCTATTATGGGCTGCCCAGTACTGTGCTCTGGCTGGCAATGCTTGGGGTGCATCATTTGTTCCAAGCTTGGCTTATCAAACTGATAGAATTTTGCAGCAAATGAAGAGTTGCTGGATAAGGAATAAACTCTTTGTTCCAGCTTTCAGTAGTGGATAACCTCACCTTCAAGCTTTCCATCTAATTAGGAATGTGGATGTATGCATGGAGCAGGTCTGTATGTGCATTTGACAGTGTCATTATTTATTGCTAACCTTTACCACTGCTTGTACCTGCCTCTGCTGCTGGCTGATTTCAGCCCTCAGAGCATCACAAATACCCAGTTGATTGATGCATAAAATGGAGAGGAAAAAATAAGGTTGGAAACAGAAGATACTGTGTCAAAATGCTCCGTGGAGTATGAAAGAATTCTGCATGTTCACTGTTATTTGAATCTGTTTGTGGTGAAAGCAAAGTAAATGTCAAGTTGGATCATACGTGAATATACTCTCTGGTTTTCCACTGTACTTTCAAAATCTGATCATCCCTAAAGGAGGATTAAATATACAGTGCTATTATCCTCTTGATCTGGATATTGAACTTGGGTGGATTCAGGCGTACCCAGGGCTCCTGTGGCAGAATTATACCAAGGGTTGTTTGAAGCCTTGTGGGCTGGCCAAGGTATGGGAGGTGGAGATGTGTAAACAGAAATGTCCAGATGTAAGAAAAGTTTTCTGTGGTTTACTTAACAGTTGAAAAGAGAGATTTTAATCTGGGCAGATGCAGAGTGCCAGTTTCTTCTCGGAACTGTTCAGCATCTTCCAAAGTCTGGCCCTACTTGAACATGCATACGGTCACTACGGAGGAATGTCAGCTGCAGCTTGTGAGAGCAAGCGTGGTTGTCCTTTGTGAGTCAGATTTAAATGGACAGGTCTGTTGTCTGTCTCTGAAAGCATCAGCACACCATGCATCTCAGGCTGTTCTCAACCTCATCCCATAGGAGGCTGCCTCCAACCATCTCCCCATCCTTGGCTGTCCTTGAGAGAGGCAGCTCCTCTCTGGGACTGCTTTGTGAGTCAACCCTTGGGGGAACATCAGCTCTGGGAGACAGCTGCCTCTGTTGGTGGCAGTGTGTGACACACAGTGGTCTGGTACACAACTGAATGTACAATGATCATCTGGAAGAAGCACTGGTGATCTGCTTGGCTTATATCAGGAAGGTGCTGATGTCGAGAGCCTGCAGCAGCAAATCTGACAGCTCCACGTTGGCTTTTCAGTCTCATACAGGTGTGAACTAGGCAGGACTCAATTGTTTTCACTCTGGAAGAGCTCTTTTGGTCAAAGTGGAGGTCTCATAGAAGGTCTGGGCTGCTAAGCTGTTTATCATGGATCTTGGTCAGAAATAAAGATCTTATCTCATCATGGAGGAGATCTCATGACTTTTCATTGGTCCCAAATTGTCTTCTAATAGAGAGAAACAGGGAGATTCGCAGCAAGTCAAACTCCCCAGTGTGCTGTGAATAGGATGAAGTGGAGCAATGCCTGGAGACCTCTCATCTTTACATGGCAGGGAAAGTGGGGCTAGGAGGTGATGTGATGTTAGAATGTTTGCTTTCTGTGATGTTACCCTGTATAGGAGATTTCTCAGTGGAGAGCTATGCTTTATTAAGGTATGTCTGCTTTCTGAATTGAGTAGAAATAGCTGGAAGTATTGGAAGGGACAGCAGGAAGCTTGTGATCCTGGCCATACATTAAAAGCTGTGGTCGCACTGAGACATTCAAGAGCTCCTTTGTGAACATGACTGTTGCTGTGAGTTATGTATGGTGATGGCTGCTCTGCTTGCCCTGTCTCAATCACTTTCTACAATTCTGCCTGCAG
Seq C2 exon
GTACAACGTCATCTTTCCAAACTCTTTGACAGCCTGGCCAAGATGAGATTCCAGCTGGACTCTGAGCAAAAGCCAACCAAGATTGGCCTGGGAATGTACAGCAAGGAGGAGGAGTACGTCAGCTTCAGCGAGCCATGTGACTGCAGTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]