GgaINT0127353 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1062151-1065223:+
Coord C1 exon
chr18:1062151-1062277
Coord A exon
chr18:1062278-1065070
Coord C2 exon
chr18:1065071-1065223
Length
2793 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTCTACAATTCTGCCTGCAGGTA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCTGTCACTGTGTGAGAAGGCTTTGGCTGAATATTTGGACAGGAAGAGGTTGGCCTTTCCCAGATTTTACTTCATTTCTTCTGCAGATTTATTGGATATTCTTTCCAATGGCACCAACCCACAGCTG
Seq A exon
GTAAGCATCGCTCTGTGTCATCTTTGCAATTCCAGCTGTCAGTGATATCACAGCAGAAGACCACGTTCTGGGACTCTCCCGTGGCTTATCCCTTCTTTGAGTGCTTTTTCTAACCTCCCTTACGTGGTTAAATAATAATTCCTTCACAAGTGAACTTCATCTGTCATCTCTGAAAGCCAGTGCACACTGTGTTGTCAGATGTAACCCTGGCGAGGTTTGCAGATGGTTCTGAAAACATTGCTCAGAGCAGGTTTTGTCTGTGTGTTGATGGTGCCAAACCACTGGTGGTGGGTGAGCTGTGGAGAGGAAAATATCACTCTCAAAGATTCCGCTAGAACTTGTTGCTGACCCGGGATCCCCAGGCTCAGGTGCCACCTGCTGCTGGAAGAGCTGCAGACAGAGCACTTAGAGGTGGAAGGAGATGTCCCTTCTGACACAGAAGAGTCATTTTGTTATTCAGCCACTTCTTCCCAGAACAGAGACCTTTGGCGTGCCCTCGTTAGAGGGGAAAAACACAAACTGAAGGAGGCAGGACAGCTGGTGACCAGACAGTGACCATGGCCAAGGCAGGCAGATAAATCTCCTGGTTGCTCTCCATCCCTGCACACCTCAGGGTGCAGGCTGGACGACCAACCTCTTGCCCTTTCCTGGGCTTTCTGACCAAGGACATTTCTTTGTTCCAGTCTGAGTTTTGGAATGCCAGGTATGGGGAAGTCCCTTGAAATGCACAATTCCTCCTGTTTACTTGTAGTGGGGGAACTTCTAGTTACCTTCCTATTTTAGGAAATGACCTCCATGTGTGCTTTTCCTGCACTCCCCAGATGAGCACAAACTCTTCCTTTATCGTAGTGGGCAGAATTTGGTGGAAGTTTCGCCATAAGGAGCAAAGCAGTGCTGGGGTTGTTTAGTGGTATGGGAGCACCCTCTGGAAATGGGGGCTATTATGGGCTGCCCAGTACTGTGCTCTGGCTGGCAATGCTTGGGGTGCATCATTTGTTCCAAGCTTGGCTTATCAAACTGATAGAATTTTGCAGCAAATGAAGAGTTGCTGGATAAGGAATAAACTCTTTGTTCCAGCTTTCAGTAGTGGATAACCTCACCTTCAAGCTTTCCATCTAATTAGGAATGTGGATGTATGCATGGAGCAGGTCTGTATGTGCATTTGACAGTGTCATTATTTATTGCTAACCTTTACCACTGCTTGTACCTGCCTCTGCTGCTGGCTGATTTCAGCCCTCAGAGCATCACAAATACCCAGTTGATTGATGCATAAAATGGAGAGGAAAAAATAAGGTTGGAAACAGAAGATACTGTGTCAAAATGCTCCGTGGAGTATGAAAGAATTCTGCATGTTCACTGTTATTTGAATCTGTTTGTGGTGAAAGCAAAGTAAATGTCAAGTTGGATCATACGTGAATATACTCTCTGGTTTTCCACTGTACTTTCAAAATCTGATCATCCCTAAAGGAGGATTAAATATACAGTGCTATTATCCTCTTGATCTGGATATTGAACTTGGGTGGATTCAGGCGTACCCAGGGCTCCTGTGGCAGAATTATACCAAGGGTTGTTTGAAGCCTTGTGGGCTGGCCAAGGTATGGGAGGTGGAGATGTGTAAACAGAAATGTCCAGATGTAAGAAAAGTTTTCTGTGGTTTACTTAACAGTTGAAAAGAGAGATTTTAATCTGGGCAGATGCAGAGTGCCAGTTTCTTCTCGGAACTGTTCAGCATCTTCCAAAGTCTGGCCCTACTTGAACATGCATACGGTCACTACGGAGGAATGTCAGCTGCAGCTTGTGAGAGCAAGCGTGGTTGTCCTTTGTGAGTCAGATTTAAATGGACAGGTCTGTTGTCTGTCTCTGAAAGCATCAGCACACCATGCATCTCAGGCTGTTCTCAACCTCATCCCATAGGAGGCTGCCTCCAACCATCTCCCCATCCTTGGCTGTCCTTGAGAGAGGCAGCTCCTCTCTGGGACTGCTTTGTGAGTCAACCCTTGGGGGAACATCAGCTCTGGGAGACAGCTGCCTCTGTTGGTGGCAGTGTGTGACACACAGTGGTCTGGTACACAACTGAATGTACAATGATCATCTGGAAGAAGCACTGGTGATCTGCTTGGCTTATATCAGGAAGGTGCTGATGTCGAGAGCCTGCAGCAGCAAATCTGACAGCTCCACGTTGGCTTTTCAGTCTCATACAGGTGTGAACTAGGCAGGACTCAATTGTTTTCACTCTGGAAGAGCTCTTTTGGTCAAAGTGGAGGTCTCATAGAAGGTCTGGGCTGCTAAGCTGTTTATCATGGATCTTGGTCAGAAATAAAGATCTTATCTCATCATGGAGGAGATCTCATGACTTTTCATTGGTCCCAAATTGTCTTCTAATAGAGAGAAACAGGGAGATTCGCAGCAAGTCAAACTCCCCAGTGTGCTGTGAATAGGATGAAGTGGAGCAATGCCTGGAGACCTCTCATCTTTACATGGCAGGGAAAGTGGGGCTAGGAGGTGATGTGATGTTAGAATGTTTGCTTTCTGTGATGTTACCCTGTATAGGAGATTTCTCAGTGGAGAGCTATGCTTTATTAAGGTATGTCTGCTTTCTGAATTGAGTAGAAATAGCTGGAAGTATTGGAAGGGACAGCAGGAAGCTTGTGATCCTGGCCATACATTAAAAGCTGTGGTCGCACTGAGACATTCAAGAGCTCCTTTGTGAACATGACTGTTGCTGTGAGTTATGTATGGTGATGGCTGCTCTGCTTGCCCTGTCTCAATCACTTTCTACAATTCTGCCTGCAG
Seq C2 exon
GTACAACGTCATCTTTCCAAACTCTTTGACAGCCTGGCCAAGATGAGATTCCAGCTGGACTCTGAGCAAAAGCCAACCAAGATTGGCCTGGGAATGTACAGCAAGGAGGAGGAGTACGTCAGCTTCAGCGAGCCATGTGACTGCAGTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]