HsaINT0050057 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11597638-11603200:+
Coord C1 exon
chr17:11597638-11597764
Coord A exon
chr17:11597765-11603047
Coord C2 exon
chr17:11603048-11603200
Length
5283 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GGCCTGGTTTCCCTTCATAGGTT
3' ss Score
9.62
Exon sequences
Seq C1 exon
ATTGTGCCTGTGTGAGAAGGCCCTGGCAGAGTACCTCGACACCAAGAGGCTTGCCTTCCCGCGGTTTTACTTTCTCTCCTCCTCCGATCTGTTAGACATCCTTTCCAACGGCACAGCTCCACAACAG
Seq A exon
GTAAGCTGGAGGAGCATCTGCAGAAAGGTCTAGGAGGGCTGAGGGGTGCCCAGCAGGAGGCAGTTTCTGGCTCCCCATCATGCCTCTTCTCTCTGGCAGGTTCTGTACTTCAGACCTGTCTGTGTTGCCCCCAGCATCATCACATACCTCGGAGCTTTCTTGCTTTCTTGCTTTCTTGCTTTCTTGCTTTCTTGCTTTCTCGCTTTCTCGCTTTCTCGCTTTCTCGCTTTCTCGCTTTCTCGCTTTCTCGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCAGATGGATTCTTGCTCTGTCGCCCAGACTGGAGTCAGTGGCACGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCCATCCCCCTGCCTCAGCCTCCCGCGTAGCTGGGACCACAGGTGCATGCCACCATGCCGACTGATTTTTTTTGTATTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGGTGGTCTTGATCTCCTGACCTCGTGATCTGCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAACTGTGAGCCACTGCACCCGGCCACCTCGGAGCTTTCTTAATCCCCATCAGTATTGCTGCTCAGCATGCCCTCTGGCCCATCAGAGGCTAATCTCTAACAAAGAACTGAGAAACTTTGAGGATGGCAAAGGTGGAAGGAGTTGAGGCTTGGCAGAGAATGCCTTCAATCTGATTCTGAAGAAAGATCCAGGAAATACTGGCCAAACTCGATAGCTAAAATTTCTATAGGGAGATAAGATTGGAAGTTATGTTAACTGAATATGGAGGTAAGGCTTATTGGCAAAAGCATATATGAGAAGCCCAAAATGTGGGGTTCTGGCTTCTGGTTCTAGACAGTTACTAGCCATAGAGTCTTGGACATGTGACTTCTTAGCAACAAACTTTCCTTATCTGTAAAACAGAAGAAACCTGCTGTGTTCGAAGGTTTTTTGAGTATTAAAGTAACTAATTGAAGCAGTGTTGGTATTTGGAGCTACAGACACTGGTTCTGAAATTTGGGAGTGCATCAGAATCACTTGGAAGGCTTGTCGAAGTACAGATTCCTCGGTCCCACTCCCACTGTTTCTGATTCACTACGTCTGGGTAGAGCTGGAGAATTTGCATTTCTAAGAATTTTCCCAATATGCTGCTGGTCTAGGGACTACACTATGAGAACTTCTGCTCTCAACATTGTCTGGGTCTCAAAATGCTTGGATGAGTTCTTTTTCCTCATGTGATTTTGTTATTCATTTAAAGAATAGTTGGGCTCATTTGCTTCTTTTTGCTTTCAGTTTTAGGGTTTTTCCCATACATGTTTATTTGATTGTTTGAATATGTATGACACTGATAGGATTCCAAAAGTCAAACTATGCAAAAAGATATGTATATACTCAGAGATGTATCCTTGCCTCCTCTGTTCCTTTCATGCCATAACCACGTCTGTTCCACCCACTATAGGTAACCAATTTCATTAATTTCTGGGTTAGCTTTCCTATGTCTATCTTTACAAAAATAAGCAAATGCACATTTACATTCATGCATGTACAGTTTCTAATTTCCCCTTCTTTCATACACAAAAGGTAGCATGCTACGCCTACCTGTTTGCACTTTGCTTTTTTCTACTTAGCTACATAGCTTGGAAATCACTCCATATCAAGTCAAAGATATCTCCCTCATTTTTTAATATTTGCATCATACTCCATGGATTGATATACCACAGTTTGGCCATAGGTTATTTATTATATTTTGTAATTACAAAGAATGTGGCATTGAATAACCTTGGACTTTGTATTGTTGGCCATCTGTCTTCCAGGTAAACTCCTAAAAGTGAGATTCCCGGCTCAAAGGGTGGATACATATGTAGTCTTGTTAGATATTGCCAAGTTTCCACCCTTTTGCTTCACCACAAGCAGCAGACAAGAGCTTCTCAAACAGAGCCAAAGGATGAAAACATGCATAAGTTGTTTTGTCTTTGACCTACCCTTTCTAACTTAGTGAAATTAGGTTTTGATTTGTTGATAAGAAGCAAGTACTAAAGAGAGATTATCCCTGATAGTTATAGCAGTTCTTTTTTTCCTATAGATGAAAATATTTCCAAAGTAGTCCAGGTGTGGTGGTGTTGAAATATTTATTATTAATGCATTAGCATTCTGTATTATAACTGTATTTTTATTCATTCTGTGTTCAGATCACTGCCAGATTTTTTTATATCTCATTCTTTTTAAAAATTAATTAATTTTTTTTTAAGGTTGGATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCATAGCTCACTGCAGCCTCAAACTCTTGTGCTCAAGGGTCCTCCCACCTCAGGCTCCAGAGTAGCTGGAACTACAGGCATGAGCCACCACACCCAGCTAATTTTTTAAAATTCTTTGTAGAGACGGGGTCTTGCTGATTTTGAACTCCTGGCTTCAAGTGATCCTCCCGTCTTGGCCTCCCACAGTGTTGGGATTATAGGCATGAGCCACCAGAATAGGCCTCATTCTTAAATATTTATTTTGATTCATTTCTTATTTGAGTACATTTTTGAGTATTCCCCACACCCTAAGAGGTGAAGCATGGTGGAATACATCCTAATTCCTTCTATATCTGTGACTCTGTCATTTCACATGTGAGCAAGTGAATGGTTAGGGTTAGAATTCATGAGTCACAGTGATCACCTCTCAATCCATGCAGATATCACTCTGCTGTTTGTTGTTACAAAGAAGTCATCTGAGGCCTGCCTGCTTTAAAAAAAATTTCTAGATAGCCTAATTTCTTTCTATCTAGGTCCCTATAGAGAATAAAATTTAAATTAATTTCTAAAAATTTGTATGCTTATATACTTGTTTTGTTAATTTATCCCTAAAACATGATGAGATTTTGTCCTATCTGAAAACGAGTGCTTTTATGATCTTGAAAAAGTCTTCTTCTAGCATGTTTTTAAATAATACATCTATCCCATTTATCTGTATATTTTTTCATTCAGGTTTATCATACTTCCGTAAGCTGAGATTCCACTTTATACATGCTATATACATTACCTTCTCTTTCATCGTATTTTTATCTCTTAGTCCTCTTCCTTGGCATTTATCAGTAAGTTTCTCAAGCTCTTCCACCATATTTAATTTTTTGTGTCAATTCTGCACTTTAGTGTTGCTAATACTGCTATAAACTGTACTCTGTCATTGTTAGTCTCCTTACTTTATTTCTCTACCTCTGCCAACTCATCTTTCACCACGTTTTATAGACTTCATGTTTCTTTAATGTAATTGAAAGAAAAACAAGGTGATGGTTCACAAATTGATTTGTTTCCATTATTAAAGGTTTAAAAAATGTTATATACAATTTTATGTAAAGTTATATATAATTATGTATAAAGGTTAAAAAAATTATATATAAAATTATATATAATGTTACTTTATAGCATATATAGTATATATACCTATATAAAATTTAGCTATATATAATATATAATTATATATTAGTATTATATTATTAATATATTATTATATTAATATATTATTATATTAATATAATAATATATTAATAATATAATTATATTAATATAATAGCAATATATTATATAATATATTAATATATAATAATTATATAATATATTATATATTAATAATTATATATTAGATTAGATAGAAAATAATAATATATTAATATTCTATATTATACATACTAATTATATATTATATATAAAATAACATAGATACATTATATATTTTATATATATATATGCTCTTCTTTGCCCTCTTGAGTCCTGTTTTCTCCTTTTAAATTTTGGGATATTTTCATAGGTTCTATATTGTTGTTATTTTTAATTTGCATTTGTTTTTCAATAAAGAAAGGTCTATCTTGGTATTTGTACCCAAATCAGTGTGGGTGGTGTTTCCATGGGTACCTTCACAGTTTACCTAAACACTCTTAGATTTGTCCTCTCATCTCATAAGCTGGAGAGCTGGTTGTTCTAAATTTAGCATTAAAAGTCAGGATACCAGCAGCTGGAGGGCCCTTTGTAATTATTCAAGAAGCTCTACCAGGGGGCAGGTTCTGTTTATTCTTTTTCCTTCAGTCTGCCATTTTCTTCACCTCAGGACCACAACATAGCTCTGTCCAGCATCCCTCCTAGCACTACAGCCCCAGGCAATCACTGTAGAGGACCTCTACTCCTCAGATGCCATGGCTGGGAGCAGCCCGGCACAGCCAGACTTTATGCTTGCCATGAGCATGCCTGCACTGCTTGGAACCCTTCTGATGTGTGTTTGTTGAACTGAAGAGGTTTCAAGAATGGGGTGGCTATGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGGGGGCGGATCACGAGATCAGGAGTTCAAGACCATCCTGACTAACATGGTGAAACCGCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCACACACCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAATAAAAATAAAAAAAGACTGGGGTGGCTTCTTCCACAGGCCACTGCCGCCACCACTGTTGACTCACCAGATTCAATGTATGTTAGCATTCTTCTACTAGATGGTCCTTTGCTCATGTCCTGTACCATGGTAGTGTTTTCTTAGGAAGAAGGTTTACAACTGGACCATCATATTTTTCTCCAATCTAGTCCTATCTATAGTAGACCAATCCAAATTTAGTCAAACCATTGTGACTTAGTTGGTTTATAGCTAGTGCACAACTCTCACTAGTTTTATTCAGTCTTCCTTTGGCCACTTCTACGGATTCATTTTATTCCTGTCCTCACATCAGCATTGTTCCCACAAACTTCCTTCTAAATGCTTGGTATCCACCACTCTGTCTTTCACAATGATTGCCACATGGTAGGCCTCTAAACAATTCTAATAAGCAGCTTCCCGAACATGTTTTATGATCCATTGGCCTGGTTTCCCTTCATAG
Seq C2 exon
GTTCAACGTCACCTTTCCAAACTCTTTGACAACATGGCCAAGATGCGATTCCAGCTAGATGCCAGTGGGGAACCAACCAAGACAAGCCTCGGCATGTACAGCAAAGAAGAGGAGTATGTGGCTTTCAGTGAGCCCTGTGACTGCAGCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)