MmuINT0051216 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65889814-65894123:-
Coord C1 exon
chr11:65893997-65894123
Coord A exon
chr11:65889967-65893996
Coord C2 exon
chr11:65889814-65889966
Length
4030 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
GCCATATCTTCCTTTCTCAGGTT
3' ss Score
10.39
Exon sequences
Seq C1 exon
ATTATGCCTGTGTGAGAAAGCCCTAGCAGAGTATCTAGACACCAAGAGGCTCAGCTTCCCTCGCTTTTACTTCCTGTCCTCCTCTGACCTGCTGGACATCCTTTCCAATGGCACAGCTCCACAACAG
Seq A exon
GTAATCTGGGTAGCAGCTTCAAGATCATCCAAAGGGCTGGGATACTCCCAACAGGGGCATCCTCTTCCATGTTACCTTGGATAACTCTGCTCCCTTCAGCTTTCTATAAACACACACACACACACACACACACACACACACACACACACACTCCACAGTCCACCCCTTTCCCCAGCAGCTGAAACAGAAGTTGAGTTGCAAAGGAGCATGAAGTTAAGCCTCCATCAGGAATGCCTTTGATCTGGCTCTGAAAAGACATCTAGTCAATTGTGGTCAGTGGTGACAGCTATATAATGAAGAATGACCTTCTGTCACAAGCAGGATGGCATGCATGGAGCTAGAGGAGGTGATGAGAAATGAGATAAGTCAGTCACAGGAAGACAAATGTCACACGTGGAGGCTGAAGTTGATCTCACTGAAGCAGAAACAATGGCAGTCACCAGAGGGATGGGGGGATGGCTAGTAAGTGATAGGCACTGGGTGTATCGTGACTGAATAACTTCCAAAATTTTATAGCATAGCAAGATACCTATAGCATACAACAGTTTACATATTTCAAAAAAGCTAATAGAAGTTCAGTAATTCCAATATAAGAACAAACCAGTGACAGCCATACCAACCATCCTGACCTGATCATATTTGTTATATAGATGTGTTGAAGTGTCACACCAGACCCCATAAATCTGTACAATTATTATATGCATGTGTATCAGTTACAAATAAGAAAAATGATGCTTATAACTTCCAAGAGGCTTATAAGTTGAACGATTTTATTGATTGAGCCTTAGGGTGGTTTAGTCAAAAAAGCCTGTGAGAAATCCCAGGTTTGGGGCTCTCTCCTTTAATTCTAGTCATTTGTTGGCCAGATAGCCTGTTATTGCTTTGCAAGGCTTTGCTGAATTACATGGTTTTAAGGTGTTAGAATAATTAGATGAAGTTCTCTTGGTGTTTGCATCAATAGACAGTGGACCTCCAACTTGAGGAAGTAGCAGAACCCCGTGGAAGGTCTGATACAAGCACATCCTCTCAGCCTCTCCCCAGAACTTCTGATTTCCTGGATCCATATGGGGCTGTAGGCTTTGTCTTTTGCAGGTTTTCCTCAGTGAACCCACACTTTTAGAGGTAGTGCCATTGGCTATGCGGTCTACATCTCCTGCTAAATGGTGGGGGTGCTGCCTCTATGCACAGATGAGTTCATAGATCTTTAATTTTGCCTCAGACTGAAGATGTGTAACCAAAACACTTGATTGAGAAATTACTTGGCTAAATTTCTTTCCTCCCTTCTGGGTGACATTGTCATACATTTGAAGAACAAAGAGGTCTATTTGTTTCTCCTTTTTTTTCTGATTTTGGGTTTTTAAATATCATCTACACTATTTTTATGCATTTAGTATACAGAACACTGATTTGATTCCAAGAGCCAAGCCATCTCAAAAGATACGTATCTCTGAGAAGCATCTTCTTCTCTGTTGTCCCCCACCATCCCTATCTCCCCTACATTCTCCCCATCACTGGTTTCACTGGGTCCTGACTTAGCTTTCTTGTGTTCATCTTTGCAAAACTGGAAGGGTCATGCTCAGATTTACTCAGATAAGTTCCCATCACCCCTCCTTCCTCACACAAAAGGTAGCATGCTGCATAATCCTGTTTTCACTTTGTCTTTATGAGGGAAGGGCAGAGTGTCACTCTGTGGTCCAAGCCAACCTTCAACTTGTGATGCTTCTGCTCCTGCCTATGGAGAATCCCTGTATGTGGTATTGGTTTTATATTTTGTTCCTTTCTTAAAAACTTAGTTATAGGTTTTAGGAAGTATTATGAGTGTTCTCTCTCTGTCTCTCTTCTCTCTCCATTTCTCTCTGTCTCTCTCCCTATTTCAACGTTCAAATGCTACTCTATGCTGGTATATCATAGTCATACCATTACATGACTATTATTTTCCTATCTCAAATGAAGTGGCATTGGTAATCTTGTGCTTTAGAGACCCCTCTGCTAGACCTAGGGATATTTCTAGAGAGTGATGGCTGAAAGAAAATACATAGCAGCCTTGTTAGCACCATAGTGCTTCACTTCACAGGAACTGTCCCCTTGGCATTGCTACCAACCACACATGAGAGTTTCTCCAACAAAGCCAAAAGCAGATCCAACCCGTCTTCAGTCTACTTGTTAGTAAGAAGTTTGTCCTAAAGGGCCACATCCTTGCATCCATAATCCTTCTGTTTTAAGCCTGTAGATTGATGTTCCCCAGTGGCCCAGGAACAGGGGAGTTGAACTATATGTCATACCAGCATTCTGATTGCAGTTGTACTAAATCCATGAGTAGAAGGGGTCAGACCATCCTCATCTTTTCTATAGCTTTAGCACCCATGGTACTCATTCTTTTTTTTTTAATTGAGTCTATGTATTTATTCAGTTATCATGATCTTGTTTACACTTTCCTATTTATGAATGTGGGATACCTACACATTTTTGGGAGGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCACACGCTCCCCCACCCACTCCCCTACCCACCCACTCCTACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCAGATAAAGTTTGCATGACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAAGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGATTACAGATCCCTTCAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCCCCGGCATAGTCTCACAAGAGACAGTCATATCTGGGTCCTTTCAGCAAAATCTTCCTAGTGTGTGCAATGGTGTTAGCGTTTGGAAGCTGATTACGGGATGGATCCCCGGATATAGCAGTCTCTAGGTGGTCTATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTACTCATTCTTAAGTATTCACTTCTTATTTAGTTCTAGTAAATAATCCACTCCTCCCATACCCTAGTAAAAGAAGCACAATAAAGATATTCCCTGATCCCTCTTCTGGGTGAGCAACTTAATGAATTGACTTAGAAGTCATAGTGGCAGTAATTTGTTTTTGATCTGGATGTCTATAGAAATCAAAATTTATATTAATATATAAAATATGGTTTTGTTTCTGTGTTTGCTTTATTTTGTTATTTTACTGTGACACTTGATGAGATTTAACCCTGCCTGGAAACCATGGCTTCTGTTGTCTTGACAGTTTTCTTCCACTAAGTGTTAAAGCATTTCTATTATACTGATCTGCTCCCATCCCTTTGGGTTCGCCAAACATCTGTAAAGTGAGGTCTGCTGCTTTTCACTACAAAAACCCTCTTCTTTTTGAGTGTAGACTTAGCTCTTGGTCTACTTCCTTGGCATTCTTCAGAACTTCTTTATTTAATGTTTGTGTCAGTTGAACCTTGAGTGTTGTTAAGACTGCTGTGAATTGATTTTGAACTTGTTCCCTTTGTTTCTTACCAGCCCATCTTTTATCATGTGCTTTACAGTGCCTGTGTTTCTTTCATTTAAATGAGAGCAAAACCAAATAATAGTTATTTCTCTTTAGGTTAAAAACCTAAAACAGGTCTGTGTTTTCACTCACTTTCACTCCTGTTTGCTCTTCTCTGGTCTCAGGAGAGGGCACTGGCTCCCATGATGGAGTCACAATGGTAGCAAGGTTCCCACCAGGTTTATATTCTTTTGGTCATGTCTGTCTAGCTCACTTGGTCCCTATCTTCATACCTGCATAATTGCTGTAACCTTCCTTCCATACTCTTGCCATTCACCCTTCTATGTTATGCTAGAGTTGTCCCCTGGCAGGACCCAGACAACCACAATCAGCTTCCTGTGCATCCTCAAACGCTTTGCCATATCTTCCTTTCTCAG
Seq C2 exon
GTTCAACGGCACCTCTCCAAGCTCTTTGACAACATGGCTAAGATGCAGTTCCAGTTAGATGCCAGTCAGAACCCAACCAAGACGAGCCTTGGCATGTACAGCAAAGAGGAGGAATATGTGGCCTTCAGTGAGGCCTGTGACTGCAGTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: