BtaINT0051345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16493258-16494087:+
Coord C1 exon
chr7:16493258-16493325
Coord A exon
chr7:16493326-16493948
Coord C2 exon
chr7:16493949-16494087
Length
623 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTGGGTTCGGATGCTTTTAGGAC
3' ss Score
5.29
Exon sequences
Seq C1 exon
ATGGAGTTTGATGAGAAAGACTTAAGACGGGAGATCAGCTACGCCATTAAAAATATCCACGGAGTCAG
Seq A exon
GCAAGTTCCACGGGGAGAGGCGCCATGTTCCCTCCATCTCCATGGTGCCACCCTAGAGCCAGTCAGTCCCCCTGAACCTCTGGGTACCCCAAATGTGAGGACTGAAGCGGGGGAGGGGGTTGCAGTAGCTGTAAGTCTCTCCCTCTGGGTCTCCAAGGGAACTCGAGGTGGATGTGCTTAGTTCTGTTTGTCTTTTGAAGGCCCCGGGGCTGCCTGCTGCCCAGGGTTCAGCATTGGTTCAAGGGCCCAGTCACCAGCCAAGGCAGAAAGCTCACTGCACGTTTGCCCGGGGGGCGGTGGGGATGCGGACGGAGTCAGAGCTGTGGCGCTGGGTCATAGGAACCCAGCATTTATTTGTCCCTGTCACGGGGGCCCTCTGAACCTCCTGGGTCCCCACCATTTTGCAATAAAAGTCACAGCTCCCTTGGTCCAGTCTCGCATGGCCATGGGGTCCTCAGATCGCCCTGGGTGGGGGGTTCCAGGTAGCAGATGCAGGCATCTGACCCCCTGACCTGCCATGACCTTGGCTGTCCCGGGAACCTGGCCCATGCCTGTGAGATTGCTGACCATGCTTTGTTTCTCTCCGACTTATCTCCCCTGCCCCTGGGTTCGGATGCTTTTAG
Seq C2 exon
GACCGGGCTCTTCACCCCGGACTTGGCATTCGAGGCCATTGTGAAAAAGCAGGTCGTCAAGCTGAAAGAGCCCTGTCTGAAATGTGTCGACCTGGTTATCCAGGAGCTAATCAATACAGTTAGGCAGTGTACCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362:ENSBTAT00000036123:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.5=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTGATGAGAAAGACTTAAGA
R:
CTTACTGGTACACTGCCTAACTGT
Band lengths:
206-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]