DreINT0058836 @ danRer10
Intron Retention
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50362527-50364592:+
Coord C1 exon
chr3:50362527-50362594
Coord A exon
chr3:50362595-50364453
Coord C2 exon
chr3:50364454-50364592
Length
1859 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TCTGTCCTGTGCGTTCTCAGAAC
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATCGTGTTTGATGAAAAGGAGCTCCGGAGAGAAATCAGTCACGCCATTAAGAACGTCCATGGTGTCAG
Seq A exon
GCAAGTGGCGTCCCATTGACTGTAGCACTTGTCAACTGCAGGTCATACGACGACTAGAAACCACAGCACTTTTATGTCCTGTGTTCACTCACTAATACTCCAGTCTTTCACTCCATTCACACTTTCTCTCTCTCTCTCGTGTGTTATTGTAAGGCCATGCTTTCACATCACAACTGCCAGATCACTGTACTGCCCACGCTACATGTTGATCTTATTATATGTTTTAGTTAAAAAACCAAAACAAATATTACATCTGTTCATTGCCGTTTTTCAGTATTTTCTATATTTTTGTACTCAAATCCTTTAAGTTTAAAGTACATGCCATTATTTCACTGACAAATGTTGTGAGCACAGTATTACAAGTCGAGAGTGCATTCATAGAGCTAGCGAATCCCTTTTCTCCTCTATTCCTTTGTGTCCTCTATTCATGCACAACTTCTCACACACTCACAAATGTATGCTGCTTGTGCGCTCTCAGTAGACTACTCAAGTGCGAATTGTCTACTCTCACTCAGTGAGATGATGCGGACTTTCAATTTGTGCCTTGTGTTTCCTCTTCCATTGATGCTTTTGCTCTTCAGAGATTTTTCGTATAAATTAGTTCTCTCAAGAACATTGACAGGATTTATATTTTATGAGTTTATTTTATGAGTTCAGTATAGTCAATACTAAAGTATGCTGAAGCATTCGTTAACAAGGTGTTGTAAATACTATAACATATACTATGCCAGGGATGTCGAACTTTCTAGAGGGCCGCAGCCCTGCACAGTTTAGTTCCAACCCTGCTCCAACACACTTGCCTTGTAGGTTTTAAACAACCCTGAAGGACTCAAAATCAATTAATTAGCGTTGGAACTAAACTGTGCAAAGCTGCTACCCTTTTTTTGCTTGACATCCCTGTACTTGGCTATACCTAGTGTCAAAAGCACTATTTAAATATTTGCATCTTTACCTGAATGCGCTCTCAATTTGTAATACTGTGCTGAGGACCTTTTGTCAGTGAATTAACGCAATAAAAGTAGTGCTGTCAACAAGTTATTTGTGATTAATCACATTCAAACGAATGTTGTATTTATATAAAATATATTTTTGTACTGTGCATATACAGATAAAACCAGAAGTTTACATACAATAAAGTCAAGTTTACACACAATAAGATTATTATGCCTCTGAAAGAGCTTAGATGATGATGTCAAGGTTTTGGAAGTTTCTGATTGGCTTATTGACAATATTTGAGTTAATTGCAGGCACAACTGCAGAATGGTATTTAATGAAAACCTCAAACACACTGCTTCCTTTTGTGACAGCCTGGGGAAATCAACAAAAAGCCAGATCACAGTTGGCTAAATTAGGGAGCATGTGGACTCTCCGATCTCAGTTTTGAACTGCAATTTTTCGATAACACATGCAACACTTCAGTTTATTACAGCTTATTTCAAACAAGAGTTATTACTAGGATCTTTCTTAGGAGACCCTAAAAATCAAATTCTTGTCTACAAACCTCAAAAACTGTGTTATGAGGGCATGGCCAAAAAAATTCAAATGACTGAGTAATCTTGTTGACTCTGAAATGTGTTTTTTTTCCCAACAGCGAGCCACCCTCACCTGTCCATTTATTATTTAGGATTCACATTTTTGTTTTAGTCTTTGTGACCTTTTATTTCCATCCACTTCACCTTCAGTTATCCCATTGTCACTTGGTTTTGTATCTGTTGTTGTTTAATCTTCACATCAATGTCACAGATATCTGTCTTTTGAGTTATTTTTTGGCCACTATTGTTGTTCCTTGTTTTCTTTCTCCTCCATGTTTGTGTCTGTCCTCTTACGTCCTGCTGTCTGTCTGTCCTGTGCGTTCTCAG
Seq C2 exon
AACTGGGCTGTTCACTCCAGATCTGGCGTTTGAAGCCATCGTGAAAAAGCAGATCATTAAGCTGAAAGAGCCCTGTCTGAAATGTATCGATCTGGTTATTCAGGAGCTCATCAACACATTCAGGCAGTGCACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937:ENSDART00000024031:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.5=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.6=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTTTGATGAAAAGGAGCT
R:
CTTGTTGGTGCACTGCCTGAA
Band lengths:
206-2065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]