MmuINT0051801 @ mm10
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21478281-21479037:+
Coord C1 exon
chr9:21478281-21478348
Coord A exon
chr9:21478349-21478898
Coord C2 exon
chr9:21478899-21479037
Length
550 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTGGGTCTGGACGTTTTTAGAAC
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATGGAGTTTGATGAGAAAGATCTACGAAGAGAGATCAGCTATGCTATTAAGAACATCCACGGAGTCAG
Seq A exon
GCAAGTTCCATGGGGAATTCCCATGTTCTCTTCCTGTCCATTCATGTGGGCCCCCCAACCTTCTGAGTCCCTGGCTAGTGAGGCCTTTAGAAGGTTCATGGATAGTTTCCAGAACTGTATAAACATCTTAGTCTTCAAGGACAGAGAAAGTGCGTGTGTTTTGGCTGTGACTGTCCTAGGTCTCTTGATTACTTGTGTCCCCTAGGATACATGACCTTGTTCTGTGAGATCTATAGTGACCAGAGGTTGGGTGGAACCAGACTTGAATCATGCCCACAGGCCCCATGTCATCATGGGTCACTTGTGGGCCTCCTGGTGTCCCCTCCTTAATTGCAATCAATGAAGTATACCCTGTTCTCTAGCGTCCCAAGATCCTTGGGTTACCCTGAGGGCTCCCCAGTTGGGGACTCTCTGGTATCCTACCCCCAGCTTTAATGGGATAGTTTTCCTTGTCAGGGACCTAGCCATGCTTAGAAAGTTGCTGACCACACCCTTTGTTTCTCTCTGACTTATCTCTCCCTGCTTCCCCACTGGGTCTGGACGTTTTTAG
Seq C2 exon
AACTGGGCTCTTCACGCCGGATTTGGCGTTCGAGGCCATTGTGAAAAAGCAGGTGGTCAAGCTGAAAGAGCCCTGTCTGAAATGCGTGGACCTGGTTATCCAGGAGCTAATCAGTACAGTTAGGCAGTGCACCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335:ENSMUST00000165766:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(11.7=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTGATGAGAAAGATCTACGA
R:
TGGTGCACTGCCTAACTGTAC
Band lengths:
201-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types