MmuINT0051801 @ mm9
Intron Retention
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21282725-21284989:+
Coord C1 exon
chr9:21282725-21282792
Coord A exon
chr9:21282793-21284850
Coord C2 exon
chr9:21284851-21284989
Length
2058 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GCCCTCCTCCGCATGACCAGGAC
3' ss Score
5.93
Exon sequences
Seq C1 exon
ATGGAGTTTGATGAGAAAGATCTACGAAGAGAGATCAGCTATGCTATTAAGAACATCCACGGAGTCAG
Seq A exon
GCAAGTTCCATGGGGAATTCCCATGTTCTCTTCCTGTCCATTCATGTGGGCCCCCCAACCTTCTGAGTCCCTGGCTAGTGAGGCCTTTAGAAGGTTCATGGATAGTTTCCAGAACTGTATAAACATCTTAGTCTTCAAGGACAGAGAAAGTGCGTGTGTTTTGGCTGTGACTGTCCTAGGTCTCTTGATTACTTGTGTCCCCTAGGATACATGACCTTGTTCTGTGAGATCTATAGTGACCAGAGGTTGGGTGGAACCAGACTTGAATCATGCCCACAGGCCCCATGTCATCATGGGTCACTTGTGGGCCTCCTGGTGTCCCCTCCTTAATTGCAATCAATGAAGTATACCCTGTTCTCTAGCGTCCCAAGATCCTTGGGTTACCCTGAGGGCTCCCCAGTTGGGGACTCTCTGGTATCCTACCCCCAGCTTTAATGGGATAGTTTTCCTTGTCAGGGACCTAGCCATGCTTAGAAAGTTGCTGACCACACCCTTTGTTTCTCTCTGACTTATCTCTCCCTGCTTCCCCACTGGGTCTGGACGTTTTTAGAACTGGGCTCTTCACGCCGGATTTGGCGTTCGAGGCCATTGTGAAAAAGCAGGTGGTCAAGCTGAAAGAGCCCTGTCTGAAATGCGTGGACCTGGTTATCCAGGAGCTAATCAGTACAGTTAGGCAGTGCACCAGCAAGGTACCACACCTGCGGACGCGGGGCCGCAGGCTTGGTATCAGGCCCCAGGTTACCTCACTTCCAAGAATCCTACAGGGATGGGACTGTGTCAGTCTGGACCCACTCAGGAGGGGGTGGGGGAATGCTGGGCTTCTTAGAACCAGCTAGACTGGTGACAGGTCTCCTGGGATCCTGATACCAAGCCCAGCATGCGTATGGTGGAATGGGGATGTCATCTGGCTGTGTTGCTTTGCTGCTTGCGAGGGAAGCAGATCGGGTATTCCTCTTCAGCTGTTGGAGGCCAAGGCTCCCGAAGCTTCACTGTTATCCCCCTTGAAAAATGACAAATGCCTGCTTCTTTGGAGTGGGTCACTTCTCTGTTCCCATGGCACTGGGAAGAACATAAACACTGGTGGCATACTGAGAGCTCAGTGCCCAGCTTCACAGAGCTACTTGGGTTCCACAGTGGCTCTGCCAGCCTTCACTGTGCCCTGTGCTGCCCTTGTTCCATCCCCACCCCTCCCAGGTAACTCCACACTCAGTCCTCATGGTCTTCAATGAGGACTCATGCCCACTCTTCATGGGCAACTGCCTCCATTTGGCCCAAACCACCAGGCTCCTCTGGGAGGACTGTATCCTGGGACAGCACGCTCCTGCCAAGCAGCGGGAGTGCTTGAGGGGAAGGAGAGGGCGTCTGCTAGTGCAACCTCGACATTGTCAGCTCTGAAAGGGCAGAGAGCACCTGCTTCAGCTGCCTGTCCTACTGGAGCAAAGTCCCCATTTGCTTCCTCAGCTTCTCCAGTGGGAAACAGAGCAAAATAAGCCAGCCAAGCAAGGGCTGGGGTTAGCGTTAGGGTGAGTTTGTAGAGTGCTTGGCTGGCTGCACAAAGCTTGGGGTTCCATCCTTAGCATCCCATAGACCAGATGTGGTGGCTCATACCTGTGATCCCAGAACTGGATCCAGGAGTTGGAAGTAGGAAGTTAGAAGTTCAAGGTCATCCTCAGTATATATACTAAGTTGGAGGCTAGCCTGTGCTACAAGGCCATTTCAAAAACTGAAGCCCAGAGGGGCTGCTGATTGACACCCTCTGGTCCCTTATCACAGACGTGATGATTTAAGATTCCTCACATGCCTTTGGCCCTATGCTGAGTGTCCTGTAGCACTTAGCCTTGAGCTGTAGGCCAGCCTATGCTCCCCCAGGCCTTGCTTATCCCAAGCTGCTTCCAGGACAGATGTGGGTGCAGGCTTTTCTGCGTATGCACTAACCAGCTCATTCTCCTTTCTTCTCTTTCTCTCTTTATCTCCCGTCCTATGTGTGCATTTGTGCGTGTGGCCTGCACTACCCCTGGGTGTCTCTCAACCTCGTCCCGCCCTCCTCCGCATGACCAG
Seq C2 exon
GACGGGGCTCTTCACCCCCGACATGGCCTTTGAAGCCATCGTGAAAAAACAGCTTGTAAAACTCAAAGAGCCGAGTTTGAAGTGTGTTGACCTGGTGGTGTCGGAGCTAGCCACGGTCATTAAAAAGTGTGCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-Dnm2:NM_001039520:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(12.6=100)
A:
NA
C2:
PF0103115=Dynamin_M=PU(36.5=97.4)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: