RnoINT0049857 @ rn6
Intron Retention
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22510841-22511569:+
Coord C1 exon
chr8:22510841-22510908
Coord A exon
chr8:22510909-22511430
Coord C2 exon
chr8:22511431-22511569
Length
522 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTGGGTCTGGACGTTTTTAGAAC
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATGGAGTTTGACGAGAAAGACCTCCGAAGAGAGATCAGCTACGCCATTAAGAACATCCACGGAGTCAG
Seq A exon
GCAAGTTCCACGGGGGACCCATAATCTCTTTCTTTCCATTCATGTGGGCCCCAGACCTTTTGAGTCCCTGACTAGTGAGGCTTTTAGAAGGTTCATGGCTAGTTTTCAGAACTGTATAAACGTCTTAGTCTTGTGTGTTTTGGCTCTGTGACTGTCCTGGCTTTCTTGACTCCTTGTGTCCCCTAGGACACATGAGCTTATTCCCTGTGAAATCTGTAGTGATCAGAGGTTGGTGGGGCCAGACTTGAGTCATGCTTACAGGTCCCTTTTTTATCATGGGTCACTTGGTGTCCCCCCTTAATTGCAATCAATGAAGTATGCCCCGTTCTCTAGCATCCCAAGATCCTTGGGTTACCCTGAGGACTCCCCAGTTGGGGGCTCTCAGGTATCCTGCCCCCCAGCTTTGATGATATAGTCTTCCTTGTCAGGGATCTAGCCATGCTTAGAAAGTGGCTGACCACACCCTTTGTTTCTCTCTGACTTATCTCTCCCTGCTTCCCCACTGGGTCTGGACGTTTTTAG
Seq C2 exon
AACTGGGCTCTTCACGCCGGATTTGGCGTTCGAGGCCATTGTGAAAAAGCAGGTGGTCAAGCTGAAAGAGCCCTGTCTGAAATGCGTGGACCTGGTTATCCAGGAGCTAATCAGTACAGTTAGGCAATGCACCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649:ENSRNOT00000010947:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.5=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGACGAGAAAGACCTCCG
R:
TGCTGGTGCATTGCCTAACTG
Band lengths:
201-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]