BtaINT0052089 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001857 | DOK4
Description
Bos taurus docking protein 4 (DOK4), mRNA. [Source:RefSeq mRNA;Acc:NM_001083786]
Coordinates
chr18:25547365-25549063:-
Coord C1 exon
chr18:25548940-25549063
Coord A exon
chr18:25548823-25548939
Coord C2 exon
chr18:25547365-25548822
Length
117 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GCCTGCGTCTGTGTCCACAGGTG
3' ss Score
12.01
Exon sequences
Seq C1 exon
CTGCTCAACAAGGGCACAGAACATTACTCATACCCCTGCACGCCCACTACCATGCTGCCCCGCAGTGCCTACTGGCACCACATCACAGGTTCCCAGAACATCGCCGAGGCCTCCAGCTTCGCCG
Seq A exon
GTGAGTCACTGCTGTGCGTCACCCCCACCAGCCAGGAGGCTCTGTGGAGGACAAGGCATGCTGGGCAGGGGTCTTCTGTCCTGGGCCCAAGTCCTCAGCCTGCGTCTGTGTCCACAG
Seq C2 exon
GTGAGGGGTATGCGGCAGCCCAGGCCAGCTCAGAAACGGACCTCCTCAACAGATTCATCCTGCTAAAGCCAAAGCCCAGCCAGGGGGACAGCAGCGAGGCCAGGGCCCCTTCCCAGTGACGGCAGAGCTAGCGTGCTCGGACGACCGCTGGGGCTGCCTGCAGTGTCTCGTGGACGGCCTGCAGGGGCTGTGGGCCAGGAGCCCAGAGAAAGGGAGCAAGCCGTCCCTTCTCTGCCCCCAAGGGTGAGACTGGACCAAGGCAAAGGGCTGGCCATGCCACCTGAGCATGTGTGAGGGGCTGGAGCTACCATAGGACTATATACGGTTAATGATTTTAATATATATGGCTTATGACATTATTCTATATTAATAAGATTTCCCCCTCTGTCCCTCCCTGCCACCACATACACATTTTTTATCCCCATGACCAGGCCACAGTCAGGGCTGTTTCTGAATGTGAGGGCGGTGGTTTTTCCTGTCCCCCAAGGGGTACCAGCCCTCCTGCTTCAGGCCTGAGGAGGGAGAGTCCACACTCCCGGCGCCTGCTCTGGCTGCTGGCTTTCCCACGCAGCCCAGGGGTGGAGACAGCAGGTGGCTTCTCGGTCCCTCTGGGCCTGGTGGCACAGGAAGGATCCAAGCTTACACTGTGCCACTTGGCAGCCTTGCACTTCGGAGTTTTACACAGAGGTGACATCTCGCTGACACCTCAGGTGAAAATCTGGTTTTAAAGTGGTTTCTGCCCAGGATCTTCCTGCTTCGTAGGCGAGAAGACGCCCTGGGGGCAGGGTGCTGTTACCTCAGCCCAGGGAGGGTGGCCCTTCCTGAGCTCTTTCCTGCTCCAGGGCCAGGCCGGCCCCCAGGAGGACTGAGGGGTCGGGGGGAGCACCCTGCTGCCCCCTCACTGACCAGGTGGGCAGTGCTCCCGTGGAGGGTGCTCCCCTGCCGTGTGGCCTCCCTCTGGCCAAAAGGACTCAAAAACCGAGACCGCCCCATTTCCTCCTCCCCACATGGTGCTGAGGCTCCCTGCTGAAACGCAATTAAAGCAATTGATTTTCTAGTGCTGGTATTTATTGACTACCGTGCAGAAGGGCTATCTTTCTACTCACATCAAACCTTCGGTTGTGTGTGTGTTGGGTTTTTTGTTTTTAATATTTTAGGGTTCTGATCTGTGGGAACAGACCCTGTTGTAAATAACCACTATTTGAGTTGTGGCAGGAGGATGGTAAAGCAAGAGGCCCCTCCAGACAGAGCCCTGGAGCCAGGGAGGGGCCACGGCCCGTTCAGCTCTGAACCTGACCCAGGGAATGACCACCCCAGGAGTAAGCTAGCCTGAAGAAGGGCACCCAGAGGCCACGGGAGGGGAGGCAGAGCTGGCTGGCTCGGTTCGTGGCTCGATGACGCATGAAGGAGATTACGTACGTTGTGCTCTTTATTGCCAAAAATAAAAACTTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001857:ENSBTAT00000057319:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGTTCCCAGAACATCGC
R:
CTCCCTTTCTCTGGGCTCCTG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development