RnoINT0050524 @ rn6
Intron Retention
Gene
ENSRNOG00000015679 | Dok4
Description
docking protein 4 [Source:RGD Symbol;Acc:1310084]
Coordinates
chr19:10573508-10574093:+
Coord C1 exon
chr19:10573508-10573628
Coord A exon
chr19:10573629-10573723
Coord C2 exon
chr19:10573724-10574093
Length
95 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
GCATGCATCTCTGTCCACAGGTG
3' ss Score
10.75
Exon sequences
Seq C1 exon
CTGCTGAACAAGGGCACCGAGCACTACTCCTATCCCTGTACACCCACGGCCATGCTGCCCCGCAGTGCGTACTGGCACCATATCACGGGTTCTCAGAACATCGCTGAAGCCTCCAGCTATG
Seq A exon
GTGGGTCATCGTTGGGGGCCTGCCCCTGTGGAGGTTTCTTGGGCAAGGGCTTTGGGTCTTGGATTCAGATTCTAAGCATGCATCTCTGTCCACAG
Seq C2 exon
GTGAAGGATATGGGGCAGCCCAGGCCAGCTCAGAAACAGACCTCCTGAACAGATTCATCCTGCTTAAGCCAAAGCCTAGGCAGGAGGACAGCAGTGAGACCAAGACCCCTCCCCAGTGACAGCTGCTAGGCTGCAAGAACTCACGACTGCTGGGCCACTTGCTGGAGGACAGCTCACTGCAGCAGTCCATGGACAGCCTCAAGGAGCTGGTGGCCAAGAGCCAGAGAGCAAGCTGTCCCTCTTGCCCTCAAGGGTGAGGCTGGACCTCAGTACATGGCTGGCCACACCACCTGAGCATGAGGGGCTAGAGCCACCGTGGAACTATACACTGTTAATGGTTTTAATATATATGGCTTATAACATATTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015679:ENSRNOT00000021037:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATCGCTGAAGCCTCCAG
R:
AGCAGTCGTGAGTTCTTGCAG
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]