GgaINT0024980 @ galGal3
Intron Retention
Gene
ENSGALG00000001160 | DOK4
Description
NA
Coordinates
chr11:550420-550730:+
Coord C1 exon
chr11:550420-550543
Coord A exon
chr11:550544-550614
Coord C2 exon
chr11:550615-550730
Length
71 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACGCTGTGCTCTGTCCCCAGGTG
3' ss Score
12.49
Exon sequences
Seq C1 exon
CTGCTGAACAAGGGCGGCGAGCCCTTCTCCTACCCCTGCACGCCCACCACCATGCTGCCCCGCAGCGCCTACTGGCACCACATCACCGGCTCACAGAACATGGCCGAGTCCTCCAGCTACGCCG
Seq A exon
GTGAGTGTCCCCAGGGCCCCGCGGGGCTCCCGCAGCCCCTCAGCCATCCCCACGCTGTGCTCTGTCCCCAG
Seq C2 exon
GTGAGCCCTACGCGGGCGCCCAGGCCGGCTCGGACACCGACCTCCTCGACAGGTTCATCCTGCTGAAGCCAAAGCCCCCCGGCGGTGACCAGGCCGAGATCAGGGAGCCCACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001160:ENSGALT00000001745:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTCTCCTACCCCTG
R:
TTGGCTTCAGCAGGATGAACC
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]