HsaINT0051474 @ hg19
Intron Retention
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:19868]
Coordinates
chr16:57505870-57507648:-
Coord C1 exon
chr16:57507525-57507648
Coord A exon
chr16:57507408-57507524
Coord C2 exon
chr16:57505870-57507407
Length
117 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCCTGCTTCTGTGCCCACAGGTG
3' ss Score
11.53
Exon sequences
Seq C1 exon
CTGCTGAACAAGGGCACGGAACATTACTCGTATCCCTGCACACCCACGACCATGCTGCCGCGCAGTGCCTACTGGCACCACATCACTGGTTCCCAGAACATCGCCGAAGCCTCCAGCTATGCTG
Seq A exon
GTGAGTCGCTTCCATGCCCCACACCCACCTGCCAGGAGGCTTTGTGGAGGATGAGGCCTATTGGGCAGGGGTCTTTTGACCTAGCTCTGAGTTCTGAGCCTGCTTCTGTGCCCACAG
Seq C2 exon
GTGAGGGGTATGGGGCAGCCCAGGCCAGCTCGGAAACAGACCTCCTCAACAGATTCATCCTGCTAAAGCCAAAGCCCAGCCAGGGGGACAGCAGTGAGGCCAAGACCCCATCCCAGTGACCACAGTGCTGGCGAGCACCGATGACTGCTGGGGGCTGCCTGCTGCGGGGCTGGCTGCAGTGTACCGTGGACAGCCTCAGGGGGCTGTCGGCCAAGAGCCTGGAGAAAGGGAGCAAGCTGCCCCCTCCTTGCCCCCAAGGATGAGGCTGGACTGAGGCAAAGGGCTGGCCACACCACCTGAGCATGTGTGAGGGGTTGGAGCTACCGTGGGACTATATACTGTTAATGATTTTAATATATATGGCTTATGACATACTCTGTATCAATGAGATCCCCTCACCCTCACCCCATCCTTCCCCACCAATACACACAAATTTTTTAATCCCATGACCAGGCCACGGTCAAGGCTGTTTTTGAGTATGAGTGCAGTCGTGTCCATCCTCCATGGCACAGCCCTCCTGCTGCCAGGACCTGCTTGAACTACCAGGGCCACAGGAGGGGGATAATCAGAGCTTGAGGCTGGCACTCTGACTGCTGGCTTTTCCCAGACAGCCCAAGGGCCGGAACAGCAGGTGGCTTCTCAGTTCCTCTGGGCCTGGAGTGACACAGGAAGGATCTGCACTTCCTCTGTGCTGCTTGCCAGCCTTGCAGTTGGAGTTTTAAGCAGAGGTGACATCTGGTTGACGCCTCAGGTGAAAATCTGGTTTTAAAATGTAACTTCTGCACAGGCTCCTTCCTGCTTTGTAGGCTGGGAAGATGCCCCTGGGGTAGGGGTGCTGATTACCTCAGCCATGTGGAGGAAGGCTGGAGCTTGTTCCTGCCCCAGGAATAGGCCAGGAGGGAAGGCCGCAGCAGGACTGCCGTGGGGAGCACCCCTGCTGCCCCCCTCTCACTGACCAGGGGTGGACAATGCCCAAGCAGAGGGAGCCCCCTTGCCCTGTTTGGCCACCCTCTGGCCAGCCAAAAGCACTCTGAAACCAAGACCTTCCCATTTCCTCCTCCCCACATGGTGCTGAGGCTCCCTGCTGCAATGCAATTAAAGCAATTGATTTTCTAGTGCTGGTATTTGTTGACTACCATGCAGAAGGGCTATCTTTCTATTCACGTCAAACTTTTGGTTGTGTGGGGTTTTTTGTTGTTTTTTGGGTTTTGTTTTTTAATACTTTAGGGTCCTGATTTGTGGGAACAGACCTTCTTGTAAATAACCACTATTTGAGTTGTGGCAGGAGGATGATAAAGCACGCGGCCCCTCCCAAAGGAGCCCTTGAGCTAGGGAGGTGGTGCAGTCAGCCTCGCTCTCAACGTGACCCGGGGAATGACCACCCAGAGGGATGAGCTAGCCTGTAGAGGGGAACTGGGGTCCAAAGGTCTTTGGGGAGGGAGGCAGAGCTGGCTGGCTCAGCTAAGTGGCACGATGACGCATGAAGGAGATTATGTTGTGCTCTTTATTGCCAAAAATAAACACTTTTAAAAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170-DOK4:NM_018110:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAAGGGCACGGAACAT
R:
GCACTGTGGTCACTGGGATG
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)