DreINT0009483 @ danRer10
Intron Retention
Gene
ENSDARG00000073731 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr7:28718471-28722965:+
Coord C1 exon
chr7:28718471-28718588
Coord A exon
chr7:28718589-28722625
Coord C2 exon
chr7:28722626-28722965
Length
4037 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGA
5' ss Score
2.88
3' ss Seq
CACGTCTTCCCCTCATTCAGGTG
3' ss Score
10.22
Exon sequences
Seq C1 exon
CTTTTATCCAAGGGTCCAGAGGGGACGTCCTACCCTTGCACCCCAACAGCAATCTTACCACGAAGTGCTTTCTGGCACCACATCACCGGATCACAGGCTGGAGTGGACTCTGCTAATG
Seq A exon
GTGGGATTTCATCTTGTTGATTTATTTCATCATCTTTATAAACAGGTTATATTTTTCTCACTGAGGAGGCTGTCAATGCATAGCAGAAACACAGCTGCTGCAACAACTGTTGTCAAAATAAATATGAAAATCATTTTTAATGGTTTCCACCAAAAATATTAAGCAGCACAAACTTTACATCTGTGACAAAAATATGGTCAAGTAAACTATTCTGCATTGATTCTAAGATTATTAAAATTCACCGTTATTCTCTCTTGAATGGATTCAGACCTTTTACAAACAGCCATACTCTGCTTCTTATTCTAATTCTTTACATGTACCACTCAAACCTAAAATAATCATCATAAAGTTAGGAAAGTTTTAAACAGATTACAAAAGTGTTCATTTAGTGAGCTGTGGTTATAATAATCTTGTGATGTAAAAAAACAGGGTTGCCAGGGTTTTGCACAAAAGCTAACACAATAACATTAAAGGGCACCTATAATGAAAATCATCTTTTGTAAGCTGTTTGGAGAGAACTGTGTGTAGGTATAGTGTATCCACAGTCATACTGGGGTGATATAAAGACAGCTTGTCTCTTTTTTTAAATTTCCTGACTTTAAAATAGAATCCAAATCTCTCCCATTTTGAGGCCCACCACAACGTGACATAGGAGTGTGGTTTCCCCACCCACTGGATTGATTGACAGCCACATTTAAACATGTCACCATAGTAACGGGTATAATCATATCAACCAGACAGGATGTGCACAAAGCAACTGTTATTAAAAGATCTGTTCAGCTCTCTGTGATCATCAATCATCATCAAATGTGATCAAGAATGAGTTTTACAAGTATAAAACATTTTTTAAACAGAGCATGTCTTTATTACCACAGCCGCATGTCAGTACAATTGTAAAAGAAGACGCTTCAATCCCGGTTTGTGTACGTAAATAAGGTTTATTTTATACATTAACATCCATACAACAGTGGATATTAGCGTCTATCCTGTCACATTTGCCGTGCAAAAACAGTGGTGTGTATGACTGTGTGTGTGTGCTTTTTTCTGTAGTATTTCTCACAAACATTACATGAGATCAGCTTCCTTCATGTCTGTCACTGTGCTGTTTATCTGACACAGCCGAGGCGGAGATTGAGGCACACTCTGACAAGCACATGGGAACGGTGGGCACGGTGAACTAGCATTAAAGGCACAGGCAACAAAAACAGCTACATAGTCTTCAGAGCAGAAAATTCCAACATTCTAAAAGGCATAATAAATAATCTGATGGATGTTTTGAGCTGAAACGTTACAGACACATTTTGGAGATACAAAAGACTTATCTTAAATCTTAAAAAAGGGGTAAAATGGGTGCCTTTTAAAACTCAAATTATGCCACTACCTATTTATCAATTTAACACTTTAAATCATTGTATAAATCAGGGGTGTCCAAACTCGGTCCTGGAGGGCTGGTGTCCCTCATAGTTTAGCTTTTGAACTTCCTTCAACGTAACTCACTGGAAGTTTCTAGTATACCTAGAGAGAGCTTGATTATCTGGTTCAGGTATGTCTAATTGGGGCTGGAACTAAAATATGTAGGACACCGGCCCTCCAGGTCTGAGTTTTGGACACCTCTGGTATAAATTATACACAGGGTTTCTTCTTTGAAGATAACTAAATATTAGTAATTATACAATTTTGTTATCATAAACATTTAAAGATATATTTAAAAATTAAACAATTAAAATATCAAAATGTTAACTGATTTGTAAATCAACAGATAAATCTGCATGTATTTGTAACAATGCTGGAGAGTTCTACCAATCTAATCCTACAGAAACAAAAACAGCCATTTATTTCGTCCCTCCTCGATTGCCTCTGCACTTGACAAAAGTGGGTTTACTCCGTTTCATCATCCTAGCACAGTTTTATCAATGGTAGAATATAAATATAGTCTAATTAAATATTTGAATGCAACCATATAAAATGATTAATGCAACTTGTCAGATTTTTAACTCACAGAATAAAAAAACAACCCCACAGCATCTTAAAGCATCTGTCAAAAACAGCATCTGTCAAAAATAGCCCAATTATAGGAGAAACTACAAACTTGGCAACCCTGATAAACCCAAATTGCATAACTCACCTGAATATAGTTGCTGCTTGAAGGGATACAGTTCCAGCATGAAGTAAATGAGAGTTATTATTTATATTAATTATCAAATTACTATTACATTTATTAACATCTGCCCCAATCCTAAACCTACCCCTCACATTAACATAAAAATAGGAAGAGGTGTATAGTGTCACAAAAATGGGGGCGGTGCAGTGGGTAGCGATGTTGCCTCACAGCAAGAAGGTTGCTGGTTCGAGTCCCTAGTCAGTTGGCATTTTTGTGCGTAGTTTGCATTTACTCCCCGTGTTCACGTGGGTTTCTTCCAGGTGCTCTGGTTTCCCCTACAAGTCCAAAGACATGCACTATAGGTGAATTGGGTAAGCTAAATTTTCTGTAGTGTGAGAATGAGAATGTATAGGTGATTCCCAGTGATGGGTTGCAGCTGGAAGGGCATCTGCTGCATAAAACATATGCTGGATAAGTTGGCTGGGCAACCCCTGTTTAATAAAGCTGAAAATAAAATGTTTGAATGAATGAATATCCCAAAAATTGTGCTACATTGATGTGCCCAAGTATCTTCACCTGTGTCCTTTATATACCTGACTGTGGAATCAGAATTTTTAGGAAATCAGTCAGCCAAATTATTGACTCTGGTTTTATTCACATTAAAAATGTTTACTAGTTGCTCATGTAGTATAACAGTAAACTCTGGTAAAAAAAACTGTGCTGCTCTGTCTTTTTACTTTCGCATCTTATTTTTTACTTTCGCATCTTGTAATACAAGTAAAACAATCCAATAAAGGCAGAGCAAACCATCACAAACAAAAGGGGTGGGGGGAAATCAGCAAATGTACACAACTAAACATACCAAATTATGGCTCTTACACTTCAATATTAAAATATCAATAGATTCGATACCAGCTTTGTATATTTTAGAATCGATTATCATATCAAAATATCGATATTTCAGTAATTTGGAGAAAATATGTAGTTTATTGGAAATAGAAATACAGCGGAAAGGAACCACAATTACCCTAGTTTATCTGATTAATGTCAACTTAGTCAGAACTACTTGTCCTTCCGCCTGCTGATTCAAATGCGTAATTTGGTACTGTACAACTGCAGAGCACACTAGGTAGCCACTCAGTCCGCTGGCACATGTTGTTCAGTCATGCTGTCATTGGATTGGGTGACCGCAAGCCAAGTTGTGTGGAGCTTCTTCACTTCCATAAACTTTAACGATGCGGTTTGTGACACGTGTAACAAAACAGTGAGGTACTGTGGTAAATACCACAAACCTAATCAAACATCAACAAATAAATCACAAGGCAGAATATGACAACATCATGACTAGGCGGTCAGAAGAGAAGGGCAGGAAAGGCACAGGTGCTGCTAGGGCGAGACAGACATCGCTAGCAGGCAGGCACTATTCAGGTACAGAGGGAGAAAATGTGGCGATATGGCAGTATTTTGGGGGTTTTGTGACAATGATAAAACAACGGCAGTTCCCTGAATTCTTGAAACAAATTTGTTTTAGAACTTTGTTTATGAAATAAGTAATGAACTAAATAAATGACCAAAATGTCTGCAATAGCTCAGCTTGGAGTAAAATCTGTACACTACTTGTTACTTTAATTTCACAAACTGTCATTTTAGAGCAAAGTATCGGATCGGTATCGCCGATACTCGCCTTCATTTTACTTGGTATCAGATCAGATAGGAAACCAGTGGTATCGCACATCACTGCTTAACAACATGTGCACAAACACTAAAAAGTAGCCTAGAGCGCCACCTGCTGTTAAAAATGAAGCTCAGAATCTATTCAAAAGCAAATAGCAATACATTTTTAAAAATCTCAAAATTGATGCAGGGCTGTTTTCTCAAAAAAAGAAATTATTTTAAACATTAGACCATCTAATTGACACGTCTTCCCCTCATTCAG
Seq C2 exon
GTGACCTCTACGGTGATCCTCAACCAGGAATGGACAGTGACCTCTTCTCTAAACGCCTTCCTCCAGAAAGACACTCCACACTTCCTATGGGCCGTGGCTGCTCTCAACCCCCGACACATTACCCCTCGTACCCCAGCGAGTGAGCGGCTCCGCAGTGAATCCTTCACGTTTTTCACCTCCTGACCTCCCTCCACACTGCACTCTGCCCTAAGTTTTTTCCATCAGCTCTCCTTCAGCAGGGGAAGATCCATGCTGCCTCGGTTCCCCCTGAGCCTGCCAGCGACGCCGAGGGCACGCACTGTGGAAAGAGGGAACGCACTGGGAAGTTTGAAGGGCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073731:ENSDART00000113998:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]