MmuINT0052600 @ mm10
Intron Retention
Gene
ENSMUSG00000040631 | Dok4
Description
docking protein 4 [Source:MGI Symbol;Acc:MGI:2148865]
Coordinates
chr8:94863860-94865462:-
Coord C1 exon
chr8:94865342-94865462
Coord A exon
chr8:94865248-94865341
Coord C2 exon
chr8:94863860-94865247
Length
94 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCCTGCATCTCTGTCCACAGGGG
3' ss Score
10.62
Exon sequences
Seq C1 exon
CTGCTGAACAAGGGCACCGAGCACTACTCCTATCCCTGCACACCCACGGCCATGCTGCCCCGCAGCGCGTACTGGCACCATATCACAGGTTCTCAGAACATTGCTGAAGCCTCCAGCTATG
Seq A exon
GTGAGTCGTCATTGGAGCCTGTCCCCATGGAGGCTTCCTGGGCAATGGCCTTTGGTCTTGGATTCAGATTCTGAGCCTGCATCTCTGTCCACAG
Seq C2 exon
GGGAAAGTTATGGGGCAGCCCAGGCCAGCTCGGAAACAGACCTCCTGAACAGGTTCATCTTGCTTAAGCCAAAGCCCAGTCAGGAGGATAGCAGTGAGGCCAAGACCCCTGCCCAGTGACAGCCAGACTGGAGAGAACTCATGATTTGCCGGGCCACCTGTTGAAAGGCTCACTGTCGCAGCCCATGGACAGCCTCGAGGAGCTGGTGGCCAAGAGCCAGAGGAGAGCAAGCTATCCCTCCTTGCCCTCAAGGGTGAGGCTGGACCTCAGCACATGGCTGGCCACACCACCTGAGCATGAGGGGCTAAGAGCCACCGTGGGACTATACACTGTTAATGGTTTTAATATATATGGCTTATAACATATACTGTATAAACGAGGCTTCCCTCTATCCCTCCCCACCAACACATACCCATTTTTAATTCCACGACCAGGCATGGTCAAGGCTGTTTTTGAGTATGAGGGTGGCAGTGCCTGTCCTCAGTGATACAACTCTCCTGCTGCCAAGATGGCCTGAGCTGCCAGGGTCAGAGGAGGGGGACAATCAGACTGGTGCTGTCTGCTGGCTCTTCCTCAGAAGCCCAAGGGCCAGGACAGCAGGTAGCTCTGTCCTCTGGGCCTACAGTGACACAGGAAGAGTCCTAAACTTCACTGTACCGTGTGGCAGCCTTGCACTTGGGAGTGTTTAGCAGAGGCGGCATCTGGTTTTTAAATGCACTTTCTGCACTGGCCCCTTCCTGCTCAGTAGGCTGAAGATGTCTTTGGGCAGGGCTCCCGTTACCTCGGCAGCAGAGGACAGTTGGGGCCAGCCCGGAGGGAGGACTGCAGCAGGACTGCTGTGGGGAGCACCTTGCTGCTCTCCTTCACTGACCAGGGGTATAAAGCTCCAGCAGGGGGAGTCCCTTGCCCAGGCCAGCCACCCCAGGCCAGATTCCAAAACTAAGACTTTCCTATCTCCCCACACGGTGCTGAGGCTCCCTGCTGAAATGCAATTAAAGCAATTGATTTTCTAGTGCTGGTATTTATTGACTACCGTGCAGAAGGGCTATCTTTCTATTCACATCAAACCTTTTGTTGCGTGTTTCTGTTTTTTAATACTTTAGGGTTCTGATTTGTGGGAACAGACCTTGTAAATAACCACTGTTCACATGTGTGGCAGAATGATAAGGGGCCCCTCCCAGGGGGTGCCCTAGAGCCAGGGAGGTGGCACAGCCAGCCCAACTCTGTGACCCAGGAAATGACCACCCAGAGGTCAGCTAGTTTGTACAAGAAATGGGCCCAACCCTTTGGGAGGGAGGCAAAACTGGCTCAGTTAGTGGCACGATGACGCATGAAGGAGATTATGTTGTGCTCTTTATTGCCAAAAATAAAAACTTTTAAAAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040631:ENSMUST00000046461:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCTATCCCTGCACACCC
R:
TCCTGACTGGGCTTTGGCTTA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types