MmuINT0052600 @ mm9
Intron Retention
Gene
ENSMUSG00000040631 | Dok4
Description
docking protein 4 [Source:MGI Symbol;Acc:MGI:2148865]
Coordinates
chr8:97387728-97389362:-
Coord C1 exon
chr8:97389242-97389362
Coord A exon
chr8:97389148-97389241
Coord C2 exon
chr8:97387728-97389147
Length
94 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCCTGCATCTCTGTCCACAGGGG
3' ss Score
10.62
Exon sequences
Seq C1 exon
CTGCTGAACAAGGGCACCGAGCACTACTCCTATCCCTGCACACCCACGGCCATGCTGCCCCGCAGCGCGTACTGGCACCATATCACAGGTTCTCAGAACATTGCTGAAGCCTCCAGCTATG
Seq A exon
GTGAGTCGTCATTGGAGCCTGTCCCCATGGAGGCTTCCTGGGCAATGGCCTTTGGTCTTGGATTCAGATTCTGAGCCTGCATCTCTGTCCACAG
Seq C2 exon
GGGAAAGTTATGGGGCAGCCCAGGCCAGCTCGGAAACAGACCTCCTGAACAGGTTCATCTTGCTTAAGCCAAAGCCCAGTCAGGAGGATAGCAGTGAGGCCAAGACCCCTGCCCAGTGACAGCCAGACTGGAGAGAACTCATGATTTGCCGGGCCACCTGTTGAAAGGCTCACTGTCGCAGCCCATGGACAGCCTCGAGGAGCTGGTGGCCAAGAGCCAGAGGAGAGCAAGCTATCCCTCCTTGCCCTCAAGGGTGAGGCTGGACCTCAGCACATGGCTGGCCACACCACCTGAGCATGAGGGGCTAAGAGCCACCGTGGGACTATACACTGTTAATGGTTTTAATATATATGGCTTATAACATATACTGTATAAACGAGGCTTCCCTCTATCCCTCCCCACCAACACATACCCATTTTTAATTCCACGACCAGGCATGGTCAAGGCTGTTTTTGAGTATGAGGGTGGCAGTGCCTGTCCTCAGTGATACAACTCTCCTGCTGCCAAGATGGCCTGAGCTGCCAGGGTCAGAGGAGGGGGACAATCAGACTGGTGCTGTCTGCTGGCTCTTCCTCAGAAGCCCAAGGGCCAGGACAGCAGGTAGCTCTGTCCTCTGGGCCTACAGTGACACAGGAAGAGTCCTAAACTTCACTGTACCGTGTGGCAGCCTTGCACTTGGGAGTGTTTAGCAGAGGCGGCATCTGGTTTTTAAATGCACTTTCTGCACTGGCCCCTTCCTGCTCAGTAGGCTGAAGATGTCTTTGGGCAGGGCTCCCGTTACCTCGGCAGCAGAGGACAGTTGGGGCCAGCCCGGAGGGAGGACTGCAGCAGGACTGCTGTGGGGAGCACCTTGCTGCTCTCCTTCACTGACCAGGGGTATAAAGCTCCAGCAGGGGGAGTCCCTTGCCCAGGCCAGCCACCCCAGGCCAGATTCCAAAACTAAGACTTTCCTATCTCCCCACACGGTGCTGAGGCTCCCTGCTGAAATGCAATTAAAGCAATTGATTTTCTAGTGCTGGTATTTATTGACTACCGTGCAGAAGGGCTATCTTTCTATTCACATCAAACCTTTTGTTGCGTGTTTCTGTTTTTTAATACTTTAGGGTTCTGATTTGTGGGAACAGACCTTGTAAATAACCACTGTTCACATGTGTGGCAGAATGATAAGGGGCCCCTCCCAGGGGGTGCCCTAGAGCCAGGGAGGTGGCACAGCCAGCCCAACTCTGTGACCCAGGAAATGACCACCCAGAGGTCAGCTAGTTTGTACAAGAAATGGGCCCAACCCTTTGGGAGGGAGGCAAAACTGGCTCAGTTAGTGGCACGATGACGCATGAAGGAGATTATGTTGTGCTCTTTATTGCCAAAAATAAAAACTTTTAAAAAGACAACTACTGTTGATCAATAAATATTCCTTCTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040631-Dok4:NM_053246:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCTATCCCTGCACACCC
R:
TCCTGACTGGGCTTTGGCTTA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: