BtaINT0058346 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56264825-56265431:+
Coord C1 exon
chr19:56264825-56264971
Coord A exon
chr19:56264972-56265276
Coord C2 exon
chr19:56265277-56265431
Length
305 bp
Sequences
Splice sites
5' ss Seq
GAAGTACAG
5' ss Score
-2.31
3' ss Seq
CCCCCTCCGTGCCCCAACAGGTG
3' ss Score
11.95
Exon sequences
Seq C1 exon
GCAGAGGAGAAGCAGCTGACCATGGCCGAAAAGACTCTCAAGGACCTGCAGCTGCAAAGCCAGGGGGTGGCCCCTCTGCCCCAGAGAAGGAACCTGCCCCTGCAGCCCCTGCGTGTGGACAGCATCTGTGACTGGGACTCAGGAGAA
Seq A exon
GTACAGTCTCCACTCGGATCCTCCGGGCCCACCTGCCCCACCCCTGCCACCCTCTCCCTCCCCTGCCCCCTCTTACCCACTCCAGCCAATGCCCTGCCCCACCCCTGCTCCAGCACCACCCGCTCCAAGCCCTGTCCAGCCCCTGGCCCGTCCCTGTCCTGACCCCGGCACTTCCTGTCCCTCCCTGGCCCCGTCCCTAGCCCCTACCCTACTGGCCTCTGCTGGGCCTCGATCCCTTCTCCAGCCTGGCCCCTAGGCCTGCATGGCCCCTCCCCCACCTCCCCGCCCCCTCCGTGCCCCAACAG
Seq C2 exon
GTGCAGCTGCTGCGGGGTGAGCAGTATACACTGGTGGACAACACTGACCCACACACCTGGGTGGTCCAGGGCCAGGCAGGCGAGCCCAAGCGGGCCCCAGCCGCCTGCTTCTGCATCCCAGCTCCGGACCCTGAAGCCGTGGCCAGGGCCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGAAGCAGCTGACCAT
R:
CACGGCTTCAGGGTCCGG
Band lengths:
286-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]