MmuINT0059567 @ mm9
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116091283-116091876:-
Coord C1 exon
chr11:116091730-116091876
Coord A exon
chr11:116091438-116091729
Coord C2 exon
chr11:116091283-116091437
Length
292 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGA
5' ss Score
3.33
3' ss Seq
GAGTTCCTCTCCGTCCTCAGGTT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GCAGAGGAGAAGCAGCTGGCCATAGCAGAGAGGGCTGTTGGAGATCTGCAGCAGCGAAGCCAGGAGGTGGCCCCACTGCCACAGCGCAGGAACCCATCCAAGCAGCCCCTGCACGTGGACAGCATCTGTGACTGGGACTCGGGAGAA
Seq A exon
GTATGAGCCCTACCTGCCTTCCTCGCCCGACCCAGCCTCTGTCCCCTACCTCTCCACACTGCTTCAGTCCCTAACCCACCCCACCCTGTCCCTCCCTCTTCTCACTCCTTCCCTAACCCAGCCCCACCCCTCTCAAACCTGTCCCACCTCTGACCTGTCCTTGTCCTTACCCCAGCCCCTCCCACCTCTTCTCCGGCCTTGTTCCAGCTGCTGTCTCACCTACCCATCTTGACCCTAGCCACCTCTCCAGTCCCCAACCCTCGATCCCACTGGAGTTCCTCTCCGTCCTCAG
Seq C2 exon
GTTCAGCTGCTTCGGGGAGAGCGGTACACACTCAAGGATAATGCTGACCCATACACGTGGCTGGTTCAGGGCCCTGGAGGAGAGACCAAAAGTGCCCCAGCTGCCTGCCTCTGCATCCCAGCACCAGACCCTGAAGCTGTGGCCAAAGCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-Evpl:NM_025276:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGCAGCTGGCCATA
R:
CTTTGGCCACAGCTTCAGGG
Band lengths:
292-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: