HsaINT0058497 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74014527-74015141:-
Coord C1 exon
chr17:74014995-74015141
Coord A exon
chr17:74014682-74014994
Coord C2 exon
chr17:74014527-74014681
Length
313 bp
Sequences
Splice sites
5' ss Seq
GAAGTGCGA
5' ss Score
-0.41
3' ss Seq
CTCCCTTTCTGTGCCCCCAGGTG
3' ss Score
13.22
Exon sequences
Seq C1 exon
GCAGAGGAAAAACGGCTGGCCGTCACCGAGAGGGCCACTGGGGACCTGCAGCGGCGAAGCCGGGATGTGGCCCCTCTGCCACAGCGAAGAAACCCCCCTCAGCAGCCCCTGCACGTGGACAGCATCTGCGACTGGGACTCAGGAGAA
Seq A exon
GTGCGAACTCCCCCACCTCACCCCTGCCACCATCCAGCCCCGCCCAACCCATCCCCTGCCCCTGCCCAAGCCCATCCCTGCTCCATCCCCAGCTGTCTCCTGCGCCCACTTTTGCCCTACTCCTTCCCTTGACTCAGACCCTCCTCTCTCCAAGTCCTGTCCTGCCTCTTTTCTACCCCAGCACCTCCCACCCTACTCTTGTCCCTGTTCCAGCTGCTGTCCCCATTTGTCTCTGTCCCCAGCCCCTACTCTGCCCTGGCCTTGGCCCCCTGCCCCTGAGCCCTCAGGAGCTGCTCCCTTTCTGTGCCCCCAG
Seq C2 exon
GTGCAGCTGCTGCAGGGTGAGCGGTATAAGCTGGTAGATAACACTGACCCGCACGCCTGGGTCGTGCAGGGCCCTGGCGGGGAGACCAAGCGTGCTCCCGCCGCCTGCTTCTGCATCCCAGCACCAGACCCTGATGCTGTGGCCAGGGCCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAAAAACGGCTGGCC
R:
CCCTGGCCACAGCATCAG
Band lengths:
294-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)