GgaINT0128796 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4537586-4538005:+
Coord C1 exon
chr18:4537586-4537732
Coord A exon
chr18:4537733-4537850
Coord C2 exon
chr18:4537851-4538005
Length
118 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGGGTTTGGGTTTGTCCCAGGTG
3' ss Score
7.27
Exon sequences
Seq C1 exon
AATGATGAGAAGGCAGTGAAGCAGGCGGAGAAGAGCATTGCTGACCTGAAAAAGAGGAGCAAGGAGATCAGTCCTCTGAAACTGCGCAGGATGCGTTCCTCCCAGCCCCTCACCTTGGACACCCTGTGTGACTGGGATGCAGGAGAG
Seq A exon
GTGAGAGGTTGACTGGTGGGTCCATCAGAAGAGGCAGGAATTGGATTCTTCTCCAGATCTTGCTTCCATGCCTGGTGCTGCAGAGGTGAACCTTTGCATGGGTTTGGGTTTGTCCCAG
Seq C2 exon
GTGCAGCTGACCAGAGGTGACAAGTACACCCTGAAGGACAACAGCAACCCAGAGATGTGGGTGGTGCAGAGCAGCACTGGTGTGGTGCAGGAGGCCCCTTCTGCTTGCTTCTCCATCCCTCCGCCAGACCCTGAGGCCATAGACAAGGTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAAGAGCATTGCTGACC
R:
AGGGATGGAGAAGCAAGCAGA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]