GgaINT0128796 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:4553512-4553931:+
Coord C1 exon
chr18:4553512-4553658
Coord A exon
chr18:4553659-4553776
Coord C2 exon
chr18:4553777-4553931
Length
118 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGGGTTTGGGTTTGTCCCAGGTG
3' ss Score
7.27
Exon sequences
Seq C1 exon
AATGATGAGAAGGCAGTGAAGCAGGCGGAGAAGAGCATTGCTGACCTGAAAAAGAGGAGCAAGGAGATCAGTCCTCTGAAACTGCGCAGGATGCGTTCCTCCCAGCCCCTCACCTTGGACACCCTGTGTGACTGGGATGCAGGAGAG
Seq A exon
GTGAGAGGTTGACTGGTGGGTCCATCAGAAGAGGCAGGAATTGGATTCTTCTCCAGATCTTGCTTCCATGCCTGGTGCTGCAGAGGTGAACCTTTGCATGGGTTTGGGTTTGTCCCAG
Seq C2 exon
GTGCAGCTGACCAGAGGTGACAAGTACACCCTGAAGGACAACAGCAACCCAGAGATGTGGGTGGTGCAGAGCAGCACTGGTGTGGTGCAGGAGGCCCCTTCTGCTTGCTTCTCCATCCCTCCGCCAGACCCTGAGGCCATAGACAAGGTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.731
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAAGAGCATTGCTGACC
R:
AGGGATGGAGAAGCAAGCAGA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]