RnoINT0057006 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105109307-105109905:-
Coord C1 exon
chr10:105109759-105109905
Coord A exon
chr10:105109462-105109758
Coord C2 exon
chr10:105109307-105109461
Length
297 bp
Sequences
Splice sites
5' ss Seq
GAAGTACGC
5' ss Score
5.03
3' ss Seq
CTTCTCCACCGTCCCCTCAGGTG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GCAGAGGAGAAGCAGCTGGCCATAGCAGAGAGGACTATTGGAGAGCTGCAGCGACGAAGCCAGGAGGTGGCCCCGCTGCCACAGCGCAGGAACCCACCCAAGCAGCCCCTGCACGTGGACAGCATCTGTGACTGGGACTCCGGAGAA
Seq A exon
GTACGCCCTCCCCCTGCCCTCCTCACCCACCCCAGCCTCTGTCCCCCACCTCCCTACACTGCTTCAGTCTCTAACCCGCCCCACCCTGCCCCTCCCTCTTCTCACTCCTTCCCTGACCCGGCCCCACCCCTCAAACCTGTCCCACCTCTGATCTGTCCTCAACCTTACCCCAGCCCCTCCCACCTCTTCTCTGACCTCCTCCTCCTTCCAGCTGCTGTCTCCACCCATCTTGCCCCTAGCCACCTCTCCAGTCCCAACCCTCCATCCCACACGAGCCCTTCTCCACCGTCCCCTCAG
Seq C2 exon
GTGCAGCTGCTTCGGGGAGAGCGGTACACACTCAAGGATAATGCTGACCCCTACACCTGGGTGGTTCAGGGCCCTGGAGGAGAGACCAAGAGTGCCCCAGCTGCCTGCCTCTGCATCCCAGCACCAGACCCAGAAGCTGTAGCCAAAGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGCAGCTGGCCATA
R:
GGAGGCTTTGGCTACAGCTTC
Band lengths:
297-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]