BtaINT0061648 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106290448-106291495:+
Coord C1 exon
chr11:106290448-106290660
Coord A exon
chr11:106290661-106290751
Coord C2 exon
chr11:106290752-106291495
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
3' ss Seq
CCGCACTGTCCCCTCCCCAGTGG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTACCTGTACGTGAACAGCCGCGCCTGGCCTAGCGGCTCGGTGGTGGCTGACCCCATGCAGCCGCCACCCATCGCCGAGGAGATCGACCTGCTGGTTTTCGATCTCAAGACCATGCGGGAGGTGAAGCGGGCTCTGCGCGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAG
Seq A exon
GTGGTGGGGTGATGCCTGGGTGGGGCGGGGCGGGGCGGGGCGGGGTTGGGGGCGGGGCGGGGCGGGGCTCACCGCACTGTCCCCTCCCCAG
Seq C2 exon
TGGGGCCGAGGACCGCCACGGCTACATCTGGGACCGCCACTACAACATCTGCCTGGCCAAGCTGCGGCACGAGGATGTGGTCAACTCTGTGGTCTTCAGCCCCCAGGAGCAAGAGCTCCTGCTGACGGCCAGCGACGACGCCACCATCAAAGCCTGGCGCTCGCCCCGCACCGTGCGCGTCCTCCAGGCCCCGCGCCCGCGCCCGCGCCCTTTTTTCTCCTGGTTCGCCAGCCAGAAGCACTGAGGCGCTGGGGCCCGCCGAGCACGCCCGGGACCCTTTCCCAGGGCTGAGTGCTGCCCAGACCGCACAGGGGCAGAGCAGCTCGCCACAGGAATGCCTTAGGAAGGGGGCCGGGAGGCCGCAGGGAGCGCGGCCTGGCTTCCACCACGCTGGCGCACACACACCGCCTCCCACAGCTGTGCCGCTCAGCACCGGGCAGCCAGGGTCACGTCTGACTGGCCCGGGGCGCACAGGACACTGTGTCCCTGCCCCCCGCTCCTCACCCACCCCTTTCCCCTGGGCCTGGGCCCTGGGCCCTTCAGCACCACGTGTCCCCTGGCAGCCCTGTGGGGCCTGGCGCTGTTCACTGGGCCCAGCCTTGCCCAGGGAGCTGGGGCTCCCTCCTCTGGGAGCTGCCCAGCATCAGGGTTGCAATGCAGGTCAGGCTGTCACGAGCCCAGGGGACGTGCATGTCACTGGTCACCTGTTCAGGGTCTGAATAAACAGTTGGCAAGAGCACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515:ENSBTAT00000013887:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=WD(100=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGATCTCAAGACCATGCGG
R:
CAGATGTTGTAGTGGCGGTCC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development