MmuINT0063579 @ mm10
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25504417-25505471:+
Coord C1 exon
chr2:25504417-25504629
Coord A exon
chr2:25504630-25504709
Coord C2 exon
chr2:25504710-25505471
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
ATCCAGATGCTATCCCACAGTGG
3' ss Score
2.79
Exon sequences
Seq C1 exon
GTACCTGTATGTGAATAGCCGTGCCTGGCCCCCTGGCTCAGTGGTAGCCGACCCCATGCAGCCACCACCCATTGCGGAGGAGATTGACTTGCTGGTGTTTGATCTCAAGACCATGCGAGAGGTGAAGCGAGCTCTTCGAGCGCACCGTGCCTACACACCCAATGACGAGTGCTTCTTCATCTTCTTGGATGTCAGCAGGGATTTTGTGGCCAG
Seq A exon
GTGTGGGCTCAGGTGGGCTCCAGGGCTTGGGTATGGGCTTCAGCAGGTGGGTGTGGGCTCATCCAGATGCTATCCCACAG
Seq C2 exon
TGGGGCTGAAGATCGGCATGGCTATATCTGGGACCGCCACTACAACATCTGCCTAGCCAAGCTGCGGCATGAGGATGTGGTCAACTCCGTGGCTTTTAGCCCCCAGGAGCAGGAACTCTTGCTGACAGCCAGCGACGATGCCACTATCAAAGCCTGGCGTTCACCACGCATTGTTCGTGTTCTGCAGGCTCCACGCCCTCGCCCCCGCCCTCGCCCCCGCCCCTTCTTCTCCTGGTTTGCCAGCCATAGGCGCTGAAGGCTTCAGTGATTTGAGCCATTGGAACCTACTGGGGAAAATGGTACCCCGTGGTTCTTTATTGCACTGGGGCAGAGTAGCTCATAGCAGCAATGCCTTAGGAGGGGCAGCCTGACCCCAACACACACACACACACACACACACACAAAACCTGCTCACTTAGCCATAAGGCTTAGCACTAGGGTAGCCCTTGTTGGCAGCACCAGATCCCATGCTAGCCTCTTGGCTAGCTTGGGGTACACAGGTCATTGGGAACCCTGTTCTTCACCTACCCTCTTCCCTTGGGTTGGCAGCTCACACAGGTCCAAGCTGGCTTCTGCCTGGGTACCTTTCATATTCAGCCAAACCCACACCCTTGGATGTCTTGAGTGTACCCTGGGCAGCAGGCCACAGGCACTGGTCTCTGATAATTCAGTTTTTGCTACTGAGTGGCCTGCAGTGGACTGTGGGTGCTGCATGCTGCACTCCTGAACTGTTTGGGCCTGAATAAACAGTTGGCAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095:ENSMUST00000015239:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=WD(100=43.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGACCATGCGAGAGGT
R:
GCTTGGCTAGGCAGATGTTGT
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types