HsaINT0063061 @ hg38
Intron Retention
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr9:136940435-136941463:-
Coord C1 exon
chr9:136941251-136941463
Coord A exon
chr9:136941172-136941250
Coord C2 exon
chr9:136940435-136941171
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
ACCCAGGCGCTGTTCTGCAGCGG
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTACCTGTACGTGAACAGCCGCGCCTGGCCCAACGGTGCGGTGGTGGCCGACCCCATGCAGCCGCCACCAATCGCGGAGGAGATTGACCTGCTGGTGTTCGACCTCAAGACCATGCGGGAGGTGAGGCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAG
Seq A exon
GTGCAGGGCGCGGCGTGGTGCAGGGCGGGTGTGGGCAGCAGCGGGCGGGCGGCCGGCTCACCCAGGCGCTGTTCTGCAG
Seq C2 exon
CGGGGCGGAGGACCGGCACGGCTACATCTGGGACCGCCACTACAACATCTGTCTGGCCAGGCTGCGGCACGAGGATGTGGTCAACTCAGTGGTCTTCAGTCCCCAGGAGCAGGAGCTGCTGCTCACGGCCAGCGACGACGCCACCATCAAAGCCTGGCGCTCCCCACGCACCATGCGCGTCCTCCAGGCACCTCGCCCACGGCCTCGCACCTTCTTCTCCTGGCTTGCCAGCCAGAGGCGCTGAGGTGTGCTGGGTGCACTGGAGCCACCGGGACCCCTTGAGGACATCGCCAGGCTCTGTGGCTTTTTCCCGAGCGGGAGAGGTGGAGATGCTTATAGCAGTTACGCCTTAGGAAGGGGACAACCAGGCCCCGCCACACGCTCACACACAAACCTGCTCACGCAGCTGTGATGCTTGGCACGGGGTGGCCAGTGCAGATGGAGCCCAAGGCCCCCTCGGCCTCCTGGGCAACTTGGGGTACACAGGATACTGGGGGTGCCGCTCCTCACTCAACCCCAGGCTAGGGGTACACCTGACCCAGCTGGCCTCGGCCCGGGGCACCTTCGGCTGGTCCTGTGGGGCCCTGGACGGTGGCCCAGTGGTGGCAGGGGCTGCTCCTGGCTGTGGTTGTGCGCCCGGGGCTTGGGAGCGGCCGGTCACGCTGCTGTGGGCCCGAGTGTGTTGCATGTCCACGCACCACCCGTTCAGGGCCCTGAATAAACAGTTGGCAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069:ENST00000325285:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=WD(100=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGTTCGACCTCAAGAC
R:
CAGATGTTGTAGTGGCGGTCC
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development