GgaINT1013178 @ galGal4
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:526633-529425:+
Coord C1 exon
chr17:526633-526845
Coord A exon
chr17:526846-527490
Coord C2 exon
chr17:527491-529425
Length
645 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TGCTGTCTTGTCTGCTGCAGCGG
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATACCTGTATGTGAACAGCCGTGCCTGGCCTCGGGACTGCGTCATCTCTGACCCCATGCAGCCACCCCCCATTGCTGAGGAGATCGATCTGCATGTGTTTGACTTGAAGACAATGAAGGAAGTGAAACGAGCCCTCCGTGCGCATCGGGCCTACACACCCAACGAGGAGTGTTTCTTCATCTTCCTGGATGTCAGCAGGGACTTCGTGGCAAG
Seq A exon
GTGTGTGGCACTGGGGGTGGGCAGGATGATGCCTGAGGTATGGGACGGCCTTGGGTGTTGCACTGTGGGCTGTTGTGCTGCAGGCAGGGCCGGTCCGAGAGCTGGAGGCTGCTGTGAGCAGAGCAGGAAACGGGAGGCTTGTGATGAGGAGCATGACTGAGTCAGAGAGTGCTGCTGGAGGATGTCTGCACTGGTCCTGTTGTCAAGTCAGCAAGGAAAGAGGAAATGTGGGACTGTGGCATGTTTGTCAGAGGGTGGCAGTTGCCCTTCTTGAGGGCTGCAGGCAGCAGGTGTTACAGGGCAAGTTGGGATGTCTGGAGCCGCCTCGCTGCAGCCCAGAAGAGGGCTGGCTTGCTGCAAGTGCCACAGCGTGAGTCTGGCGCACAGCCTGCGTGCTCGTGCTGCTCTGAAGAGCTTTAATTGCTGCTGCTGCTGTGAGGCCTCATTTCAGGCTCCACTTCTGGAAACCCACCTGTGTCTGTGGCAGGGCCTGGGTCACAAAGGGGATTTGCCTCCCTTGGGGTGAGTGCCTGTGGGTGACAGTCCTTCAGATGGAGGCTGGGCCCTCTGGCTGGGCCAGGGCGCTCGGTGCGGAAGGCAGAGTCTGCCTGGCCGGAGTCCTCACTGCTGTCTTGTCTGCTGCAG
Seq C2 exon
CGGGGCAGAAGATCGCCACGGCTACATCTGGGACCGGCACTATAACATCTGCCTGGCCAAGCTGCAGCACGACAACGTGGTCAACTCGGTGGCCTTCAGCCCGGTGGAGCAGGAGCTGCTCCTGACAGCCAGCGATGACGCAACCATCAAGGTGTGGCGCTCCCCTCGCACCGTGCGAATCCAGCAGGCCAGGAAGCCCAGGCCCAGGAAACTGCTCTTCTCCTGGCTCATGAACCAGAAAAGCTGAACCCAGGTACACCTGCTCCTGCAGCTTCCTCACTGCAGCCACCTCCGGAGCTTGCAGAGCTTTGAGCCCTGCACGACAGAGATGAGCTCTGGGCACACCACTCCTGTCAACCGAGTTAGGAGGGACCCTGACAGTGTTAATGGCTTCCTCCTTGGAGCATCTGCTTCAAAGACAGAACGTAATGGCTCAGGACCTGTTCCTGGGTCCTGTGGGTGCAGCCCAAGCTGGTCACTGCAGGGTCGCCTCCCCACAGCTTATCACAAACGCTGCTACTTGCTCACAGCTCTCTGGGTGAGCTTTGGTCTCAGAACAGACTGAGGCACATCTCCAGGGTTTGTACTGTGTGGGCCTGGGATGTCACTGACTTCACTGAGAGCTACCGGCTGCAGAGCACCTGCAAAAGCAGTGGTACAGTGCTGTGCTGCCTTACTGCGGGTCTCTTTTAATATAGTAGGTTTGTTATTGTTTGTTTGTCCCAAACCTCTGTGGGCAACTTGTCTGGATGCTGGGTGTGCTCAGTGCTGCCCCACAGTGTCTGGGCCACAAAGGGAGGGCAGGAAGGATCAGAGGGCTGAAAAGGCAGTGGGGGAGGCGGTGCTGGGATGGAGCTGGAGGGGGAGGGCTGCCCTGCCATTGCCTTCTCTTACAACTAAATCCTGATACCATCAGTTTACAAATCTGAGAGTGGGGAGGGCTGGTGGTAACACGGACCTGGCTTTGCCCTGGTCTTCCTCTGCTCTGTAGCACATAAATAAGCTATGGCATTGGTAACATATTTATTCCAGGGGCTTTGCTGTCCCTTCTAAGGGGTAAGCTGTGATGACTGGTCTCATGGTCACCTCCCTCCTATGCTACTCGAGTTGTGGCACTTTAGGTTCTCTTGGTATGTTCTCTGTGAGCAGATGAACAGGTGGAGGTGCAGCCCTCCTGCCTCAAGGAATAAGTGTGCATGAGCCTCCTTCCACCTGGGCTGACTCACCTGGGGGTTGGTGATCAGCTCTGAGGGCTCCTCTGATGAGGGGAATCTGGCTCACTTTATCAATTCAGTGTTGTTTACTCTGTATTTGTCCCTGAAGCTTTTCTCTCTCCAGCCATTAGCCAACTGTAAGTCTAAAATTAAGCTCCTAATCTTCACTTGGCCCAGACAGCAGGGGCCGAAGCTCCCAGGCCAGCAGTGACCCCAGGAGCTGCACCTGCTGCTGGGCTTTGGACCCCCCAGCTTGGGAGCACCAGGGCAGGTGTCTGTGCCACTCACGGCCTCAGGTTGCAAAAAGACTTCATGGCGGCAGTGGCTGCTGTCTTAATATGCACTGATGGCTTTAACAGCTCCTCCAGCCCTCAGCGAGAGGGTTTCACACCCTTCTTTTGCTTTGCCCCCACAGGTGCCCATGGCTTTATTCAGAACCGCTGTACTCAGGTTTTCTGTCATCACAGGACTTCTAGAAACAAGGGAGTCCTTTGTGTGTGTGTTTATGTGTGCGTGTATGGGTGTGCACTCAAGATCTAAACCCAGCTCTCGGTCCCCTTACACAGCAAAGGAACAGTCTCCACCTTCCCTCCTGCCCCAAGATAGCAAATCCTGTTTTCCTCCCTTGGCACGGTGTAGTAGTGAGCAAGGCACTGAGGGTTTATTGTTTGTACCAAGTTTTGCTCTTCACCATGGCATTGAATAAATACTCTGCTAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=WD(100=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAAGTGAAACGAGCCC
R:
CCTGGGTTCAGCTTTTCTGGT
Band lengths:
354-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]