MmuINT0063579 @ mm9
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25359937-25360990:+
Coord C1 exon
chr2:25359937-25360149
Coord A exon
chr2:25360150-25360229
Coord C2 exon
chr2:25360230-25360990
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
ATCCAGATGCTATCCCACAGTGG
3' ss Score
2.79
Exon sequences
Seq C1 exon
GTACCTGTATGTGAATAGCCGTGCCTGGCCCCCTGGCTCAGTGGTAGCCGACCCCATGCAGCCACCACCCATTGCGGAGGAGATTGACTTGCTGGTGTTTGATCTCAAGACCATGCGAGAGGTGAAGCGAGCTCTTCGAGCGCACCGTGCCTACACACCCAATGACGAGTGCTTCTTCATCTTCTTGGATGTCAGCAGGGATTTTGTGGCCAG
Seq A exon
GTGTGGGCTCAGGTGGGCTCCAGGGCTTGGGTATGGGCTTCAGCAGGTGGGTGTGGGCTCATCCAGATGCTATCCCACAG
Seq C2 exon
TGGGGCTGAAGATCGGCATGGCTATATCTGGGACCGCCACTACAACATCTGCCTAGCCAAGCTGCGGCATGAGGATGTGGTCAACTCCGTGGCTTTTAGCCCCCAGGAGCAGGAACTCTTGCTGACAGCCAGCGACGATGCCACTATCAAAGCCTGGCGTTCACCACGCATTGTTCGTGTTCTGCAGGCTCCACGCCCTCGCCCCCGCCCTCGCCCCCGCCCCTTCTTCTCCTGGTTTGCCAGCCATAGGCGCTGAAGGCTTCAGTGATTTGAGCCATTGGAACCTACTGGGGAAAATGGTACCCCGTGGTTCTTTATTGCACTGGGGCAGAGTAGCTCATAGCAGCAATGCCTTAGGAGGGGCAGCCTGACCCCAACACACACACACACACACACACACACAAAACCTGCTCACTTAGCCATAAGGCTTAGCACTAGGGTAGCCCTTGTTGGCAGCACCAGATCCCATGCTAGCCTCTTGGCTAGCTTGGGGTACACAGGTCATTGGGAACCCTGTTCTTCACCTACCCTCTTCCCTTGGGTTGGCAGCTCACACAGGTCCAAGCTGGCTTCTGCCTGGGTACCTTTCATATTCAGCCAAACCCACACCCTTGGATGTCTTGAGTGTACCCTGGGCAGCAGGCCACAGGCACTGGTCTCTGATAATTCAGTTTTTGCTACTGAGTGGCCTGCAGTGGACTGTGGGTGCTGCATGCTGCACTCCTGAACTGTTTGGGCCTGAATAAACAGTTGGCAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-Fbxw5:NM_013908:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(47.2=41.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGACCATGCGAGAGGT
R:
GCTTGGCTAGGCAGATGTTGT
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: