BtaINT0062522 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34982988-34983403:-
Coord C1 exon
chr18:34983260-34983403
Coord A exon
chr18:34983122-34983259
Coord C2 exon
chr18:34982988-34983121
Length
138 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TCTGGGCCCAACTCTGCTAGAAC
3' ss Score
2.83
Exon sequences
Seq C1 exon
ACTCTGGCAGCCCTCCCGGACCAGGACTCCTTCTACGACGTGACGGATGCACTGGAGCAGCAGGGCATGGAAGCACTGGTCCAGCACCACTTGGGCAAGGCGGGCACTGACGTCGACCTGCGAGCCCAACTTGTACTCTATGAG
Seq A exon
GTGGGCTGGGCCATCAGGGCTGGAGAGAGGAGGGGAAGGAGGGGCTGAAGGGGAGAAAAGAGAGGGGGCGCCATTATCCAGGGCCCCACTCCATCGAGTTGGGCCTCAGCCACTCCCTTCTGGGCCCAACTCTGCTAG
Seq C2 exon
AACGCCCTGCGGTTGGAGGATGGAGACCTCGAAGAAGCCGTCACAGGTGGGCGGCGCACCACCCGCCGAAAACCTTCCTCAGAGGAGGGCAAGAGGAGCCGCCGATCTCTAGAAGTGCGCTCCCCAGAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.844
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGACTCCTTCTACGACGT
R:
GGGGAGCGCACTTCTAGAGAT
Band lengths:
249-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development