DreINT0068500 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34313192-34314708:+
Coord C1 exon
chr7:34313192-34313335
Coord A exon
chr7:34313336-34314515
Coord C2 exon
chr7:34314516-34314708
Length
1180 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TTTTGCATGTATTATTGCAGAAA
3' ss Score
7.94
Exon sequences
Seq C1 exon
ACTCTGGCAGCACTTCCTGATCAGGACTCATTTTATGATGTGACAGACTGTTTGGAGCAGCTAGAAATGGAAAGCATCATCCAGAAACACATGACTAGCAGCGGCACTGAGGGTGACCTTAAACAGCAGTTCACTATTTATGAG
Seq A exon
GTAAACTCCCAAAACAACTCAACCACACCAGATGGTGGCTGCCAACCTTTCTTGGATATGTACGCCACCATTTAAAGTTGTTTTGGAATGCGTTTTCATGCTTTAAATGAGCTGTTCACTGTTTCTTTGCCTAAAAAAATATCATTTTTATTTCTTAATTTCACTCCTACTGAAAAATTATTTTCATTAAAAACATAAAATGCATTTTTTTTTACTTTTATAAAACTATAATAAATATTTTAGATACTTTAGAGTTTAGAAATTTTGTTGCAGAGTATGTTGCAGAGTAACTTCTCGTGTAAATGTCAACAACATTTTGACTTTGCACTTCATAATCATTTAAATGTGTGGGGTCAGTAAGAACTTTTAAATAGAGCAAGTGGTATTTTATTCAGCAATGATGCATACATTTTCTAAAGTGACAGTGAAGCAATTTATAATGTTACAAAATTTTTAATAAGCATTTTTCTTTTACCTAATCCAAGAATTCGGTTTACACAACATATTAAGCAGAACAGCTGATTTTAATGTTTTTACAATATTCCTTTTTTTATAATGTTCCTATTTTAATATAATATTTTTTTGATTAACTTGTTTTATTAATGCATAGTAGTCAGAGAGTTACAGTATTAAATACAAAGAATCACAAGACATCAACTCTTCCAGTTCATTGAAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATGTATATATATATATATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATAACAATACAGATAAAAGTAAGACATTTTGAGCCTTACAGCAATATATACAAATACATAAATGCAAATATGCAAAAGGTACAGCAGTAAAAAATAAAAAAAATAAATACTTTCAAAAAAATGAAGGAAGAAATTAACATATAAACATGCATATTTTCTTTGTGCTTTCCATTTATAACTAAGCCAGGGGCAGGGAAAATAGGTCAGCTATAGTTTTTATTTATTTATTTATTTATTTATTAAATTTGAGAGGAAGGGTTAATGTAATATTTTTAATCATAAATGTACTCTTTCAAAATAATTTTTGATCAGCAGTGTAAAAAAATACTTTAATTTCTTTTGCATGTATTATTGCAG
Seq C2 exon
AAAGCCCTAAAGTGTGAAGATGGAGAGATGGATGAAACGGCACCAAATGTGCGTAAAGACAGAAGGAAACTGACACCCAGTGAGCAGGAGGGCAGGAAGAGCCGGCGATCGTCTTCTCACAATCTTACAGATAGCTCCTTTCGACCAGCCTCCCCGACTGTTTCAGTCTCTTCTAACAGTCCAACCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.954
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGCACTTCCTGATCAG
R:
CTGATGGGGTTGGACTGTTAGA
Band lengths:
334-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]