MmuINT0064483 @ mm10
Intron Retention
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105336639-105337030:-
Coord C1 exon
chr8:105336887-105337030
Coord A exon
chr8:105336797-105336886
Coord C2 exon
chr8:105336639-105336796
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
GTCCTGACCACCTCCGATAGAGT
3' ss Score
2.35
Exon sequences
Seq C1 exon
ACGCTGGCGGCACTCCCAGACCAGGACTCCTTCTATGATGTGACAGATGCTCTGGAGCAGCAGGGCATGGAAGCGCTGGTCCAACGTTTCTTGGGCACCGCTGGCACTGATGTTGACCTGCGAACCCAGCTAACGCTCTATGAG
Seq A exon
GTGTGCCGGGGGAGGGGTGCAGCTCCCAAGTACCTATCCCATTTATTGGGCCTCAGCTGCTCGCTCACATGTCCTGACCACCTCCGATAG
Seq C2 exon
AGTGCCCTTCGGTTAGAGGATGGAGATATGGAAGAGGCTGCAGCCGCCGCTGCTGCAGGTGGCCGGCGAGAGCGGCGGAAGCCATCCTCGGAGGAGGGCAAAAGGAGCCGAAGATCACTAGAAGGTGGAGGCTGCCCTGTGCGTGCCCCAGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778:ENSMUST00000014922:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.849
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGTTGACCTGCGAACC
R:
GCAGCCTCCACCTTCTAGTGA
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types