MmuINT0064483 @ mm9
Intron Retention
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107860539-107860930:-
Coord C1 exon
chr8:107860787-107860930
Coord A exon
chr8:107860697-107860786
Coord C2 exon
chr8:107860539-107860696
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
GTCCTGACCACCTCCGATAGAGT
3' ss Score
2.35
Exon sequences
Seq C1 exon
ACGCTGGCGGCACTCCCAGACCAGGACTCCTTCTATGATGTGACAGATGCTCTGGAGCAGCAGGGCATGGAAGCGCTGGTCCAACGTTTCTTGGGCACCGCTGGCACTGATGTTGACCTGCGAACCCAGCTAACGCTCTATGAG
Seq A exon
GTGTGCCGGGGGAGGGGTGCAGCTCCCAAGTACCTATCCCATTTATTGGGCCTCAGCTGCTCGCTCACATGTCCTGACCACCTCCGATAG
Seq C2 exon
AGTGCCCTTCGGTTAGAGGATGGAGATATGGAAGAGGCTGCAGCCGCCGCTGCTGCAGGTGGCCGGCGAGAGCGGCGGAAGCCATCCTCGGAGGAGGGCAAAAGGAGCCGAAGATCACTAGAAGGTGGAGGCTGCCCTGTGCGTGCCCCAGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-Fhod1:NM_177699:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.849
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(43.9=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(16.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGTTGACCTGCGAACC
R:
GCAGCCTCCACCTTCTAGTGA
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: