RnoINT0061053 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37292239-37292629:-
Coord C1 exon
chr19:37292486-37292629
Coord A exon
chr19:37292397-37292485
Coord C2 exon
chr19:37292239-37292396
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
ATCCCGACCACCTCCATTAGAGC
3' ss Score
1.91
Exon sequences
Seq C1 exon
ACACTGGCGGCGCTCCCAGACCAGGACTCCTTCTATGATGTGACAGATGCTTTTGAGCAGCAGGGCATGGAAGCGCTGGTCCAACGTCTCTTGGGCACTGCTGGCACTGATGTTGACCTGCGAACACAGCTAACGCTCTATGAG
Seq A exon
GTGTGCCAGGGGGAAGGGTGCAGTTCCCAAGTACCTATTCCATTTACTGGGCCTCAACTGCTTGCTCACATCCCGACCACCTCCATTAG
Seq C2 exon
AGCGCCCTTCGGTTAGAGGATGGAGATATGGAAGAGGCTGCAGCTGCTGCAGCTGCAGGTGGCCGACGAGAGCGACGGAAGCCATCCTCAGAGGAGGGCAAAAGGAGCCGAAGATCACTAGAAGGTGGAGGCTGTCCTGTGCGTACCCCAGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.849
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGCGAACACAGCTAAC
R:
GGACAGCCTCCACCTTCTAGT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]