HsaINT0064166 @ hg38
Intron Retention
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67236966-67237382:-
Coord C1 exon
chr16:67237239-67237382
Coord A exon
chr16:67237115-67237238
Coord C2 exon
chr16:67236966-67237114
Length
124 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TCCTGGTCCGCCTCTGCTAGAAC
3' ss Score
4.66
Exon sequences
Seq C1 exon
ACGCTGGCGGCGCTCCCGGACCAGGACTCCTTCTACGATGTGACGGATGCACTGGAGCAGCAGGGCATGGAAGCGCTGGTCCAGCGCCACCTGGGCACTGCGGGCACTGACGTCGACCTGCGCACGCAGCTTGTGCTCTACGAG
Seq A exon
GTGGGCCGGGCCTTACGCTCTGAGGCGGATTGGAAAGAGGGAAGAGAGAAGCGCAGTCCCCAGCGCCCCACCCCACCTGCATACACGTTAACCACTTTCTTACATCCTGGTCCGCCTCTGCTAG
Seq C2 exon
AACGCCCTGAAATTGGAGGATGGAGACATCGAAGAAGCCCCAGGCGCTGGTGGGCGGCGGGAACGACGAAAGCCTTCTTCTGAGGAGGGCAAGAGGAGCCGCCGTTCTCTGGAAGGCGGGGGCTGCCCCGCGCGTGCCCCGGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723:ENST00000258201:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACCAGGACTCCTTCTAC
R:
CCCCCGCCTTCCAGAGAA
Band lengths:
251-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development