BtaINT0062721 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016264 | FKBP8
Description
Bos taurus FK506 binding protein 8, 38kDa (FKBP8), mRNA. [Source:RefSeq mRNA;Acc:NM_001205721]
Coordinates
chr7:4570061-4571272:+
Coord C1 exon
chr7:4570061-4570281
Coord A exon
chr7:4570282-4571099
Coord C2 exon
chr7:4571100-4571272
Length
818 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
CTGCGTGCTGTCCCCCTCAGTGG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CAGGAGCCCATACATCCCCCCACATGCGGCCCTGTGCTTGGAGGTGACTCTGAAGACTGCTGTGGATGGGCCTGACCTGGAGATGCTCACGGGGCAGGAGCGTGTGGCCCTGGCCAACCGGAAGCGGGAGTGTGGCAATGCTCACTATCAGCGGGCCGACTTCGTGCTGGCTGCCAACTCCTACGACCTCGCCATCAAGGCCATCACTTCCAGTGCCAAAG
Seq A exon
GTGACCACCAGGTCAAATCCCAGCACCTCCCTGCAGAGCCATCCCCACTAGTGCTAGAAACGTCAAGCCACAGAGGGCCCCAGATTCAAAATGTTCTAGAAAATTCTAGAATCTGGGTAGATGTTCAACTATGCCTAGCCTATAGATATCACTGGTGGTGGAGGTTTAGTCCCTCAGTTGTGGCCAACTCTTTTGCGACCCCATAGACTGTGGCCCACCAGGCTTCTCTGTCCATGGAATTTCCTAGGCAAGAATACTGGAATGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAAGCCAAGAATCGAACCTGCATCTCCTGCTTGGCAGGCAGATTCTTAACCACTGAGCCACCTGGGTGACTAAGCCTCCTTAGGTATCTCTAGACTTATATCCCAGGTCAGTGGAATGTTATGGAGTGCAGACAGATGTTTAAAATGTGGTTGACTGCAGAAATTGTCAATCCACGTGTCCCGTGATCAGGCCCTTGTTCACTTAGGCTCCATTTTGTAGACTCCTCAGGAGTGCCCTGAGGATGGTGCTGGTCTTGGCCTGTGTTAGGATGGGAAAGCTGAGGCCAGAGAGGCCTGAGTCCCCTCAAGGAGTAGGTGGTAGAGATCCCACGGCATTGGGAGCTTCGAAATCCCTGCCTCCTGTCACTGGGACACTCAGAGACCCTTCCCCTAAGTCTCCTCCACCACCAGGTGCGGAGGAGTGGGCCTGGCCTGGGTCGCTTAGTCCCTCTGCAGCTGGATGGCTGGGGGGAGGGCTGGAGGCATGATCACAGTAGCTGTGGCTGCGTGCTGTCCCCCTCAG
Seq C2 exon
TGGACATGACATTCGAGGAGGAGGAGCAGCTCCTGCAGCTGAAGGTGAAGTGTCTGAACAACCTGGCGGCCTCGCAGCTGAAGCTGGATCACTACCGCGCAGCGCTGCGCTCCTGCAGCCTCGTGCTGGAGCACCAGCCTGACAACATCAAGGCTCTCTTCCGCAAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016264:ENSBTAT00000021634:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=PD(20.0=24.0)
A:
NA
C2:
PF134321=TPR_16=PU(58.5=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTGAAGACTGCTGTGGA
R:
TTGCGGAAGAGAGCCTTGATG
Band lengths:
343-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]