RnoINT0061242 @ rn6
Intron Retention
Gene
ENSRNOG00000058359 | Fkbp8
Description
FK506 binding protein 8 [Source:RGD Symbol;Acc:1308670]
Coordinates
chr16:20647987-20649192:-
Coord C1 exon
chr16:20648972-20649192
Coord A exon
chr16:20648160-20648971
Coord C2 exon
chr16:20647987-20648159
Length
812 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
CAGTGACTACTCCCCTGCAGTGG
3' ss Score
4.08
Exon sequences
Seq C1 exon
CAGGAGCCCATACATCCCCCCCCATGCAGCCCTGTGCCTGGAAGTCACCCTGAAGACAGCAGAGGATGGACCTGACCTGGAGATGCTGAGTGGGCAGGAGCGCGTGGCCCTGGCCAACCGCAAGCGGGAGTGTGGCAATGCCCACTACCAGCGTGCTGACTTTGTGCTGGCTGCCAACTCCTATGACCTGGCCATCAAGGCCATCACCTCCAACGCCAAAG
Seq A exon
GTGCCCAGCTAGTTACCCGGGGTGTGTGTGCATGCGGGGATCGGGACAGCTCAGGGAATGCAATTCTGTCCTCCATTGTGTGGGAGGGGTGCAGAACTCAGGTTGTTAGCCTTCGCAGCCAGGACGCTTACCCTTGAGCCATCTTGCCAGCCTGTAGGATGGCCAGACTTCTGCATCATCATTTGGGCCGTAGAATGCTCTAGAATATCCCAGAATATAGACATATTTCCTGCCATCCATAACCTTCAGGTCAGTGGCTCCTTCCAGGTGGTATATGTATAGTCAGAAGCTGAGGCAGGAGAATGGCCAATTGTAGTCTAGACTGGGTTACATAGCAAGACCCTTTTGTGTGTGTGCGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTTCATTTGCAGTGGGGGTCAGAGGTGAACACCTGGTGTTTTCCTCAGCTGCTGCCCACATTTTTTGACATGTCATTGAACCCAGAGCTCAGTGAGAGTGAGTGGCCATGTCTGCCTCTACCCCAGTGCCGAGATTATTCACATGCACTTTGCACTTGGCTCATAAGTGAGCACTGGGATCTGAACTCACCCCTCTTGCTTGCTCACAAGCCCTTCGTGGCATGGGCCTGTCAGCTTAGCAGGAGGGTGGACATAGGAAGGTCAGGAGTTCAAGGTCGTTCATGACCACGTAGTGAATTGGAAGCCATCCATAGATGCTTGAGACCCTAACTATGGTGTAAGGACTTGGGTGGCCTCTTAGGGTCTGGTGGCGTAGACCCCAGGGGAGGGTGTGCCTATTTCCCAGTGACTACTCCCCTGCAG
Seq C2 exon
TGGACATGACTTGTGAGGAGGAGGAGGAGCTGCTACAGCTGAAGGTCAAGTGTCTGAACAACCTTGCGGCATCGCAGCTAAAGCTGGACCACTACCGAGCAGCACTGCGCTCCTGTAGCCAGGTGCTGGAGCACCAGCCAGACAACATCAAGGCACTGTTCCGCAAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058359:ENSRNOT00000077756:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=PD(20.0=24.0)
A:
NA
C2:
PF134321=TPR_16=PU(58.5=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCCTGAAGACAGCAGA
R:
CTTGCGGAACAGTGCCTTGAT
Band lengths:
346-1158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]