GgaINT0144953 @ galGal3
Intron Retention
Gene
ENSGALG00000003357 | FKBP8
Description
NA
Coordinates
chr28:2990514-2990978:+
Coord C1 exon
chr28:2990514-2990731
Coord A exon
chr28:2990732-2990805
Coord C2 exon
chr28:2990806-2990978
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
CACCTCTGGGGTCTTTGCAGTTG
3' ss Score
6.33
Exon sequences
Seq C1 exon
GAGCCCTGACATCCCACCCAACGCAGCGCTCACACTGGAGGTGGAGCTGCTGGAGGCTCGGGATGCACCAGACCTGGAGCTGCTCAGCGGGAGGGAAAAGATAGGCCTGGCCAACCGCAAGCGGGAGCGAGGTAACTTCTACTACCAGCAGGCAGATTATGTGCTGGCCATCAATTCCTACGACATCGCTCTCAAAGTCATCAGCTCCAGCTCAAAAG
Seq A exon
GTACCCCCTGCTGCTGTGAGTGAGGGCTGCCTGTGCTTCCTTCCTGTTGTAACCCACCTCTGGGGTCTTTGCAG
Seq C2 exon
TTGATTTCACCCCGGATGAGGAGGCAGAGCTGCTGGACGTGAAGGTGAAATGTCTTAACAATCTGGCAGCCTCTCAGCTTAAACTGGACCATTATGAGGCAGCCCTGAAGTCCTGTAACCTTGTTCTGGAGCACCAGCCAGGGAACATCAAGGCACTTTTCCGAAAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003357:ENSGALT00000005309:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=PD(19.3=23.0),PF134141=TPR_11=PU(44.0=50.0)
A:
NA
C2:
PF134141=TPR_11=PD(54.8=79.3),PF0051523=TPR_1=PU(23.5=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCAGGCAGATTATGTGC
R:
GGCTGCCTCATAATGGTCCAG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]