MmuINT0064693 @ mm9
Intron Retention
Gene
ENSMUSG00000019428 | Fkbp8
Description
FK506 binding protein 8 [Source:MGI Symbol;Acc:MGI:1341070]
Coordinates
chr8:73055424-73056648:+
Coord C1 exon
chr8:73055424-73055641
Coord A exon
chr8:73055642-73056475
Coord C2 exon
chr8:73056476-73056648
Length
834 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
CAGTGACCACTCCCCTACAGTGG
3' ss Score
3.4
Exon sequences
Seq C1 exon
GAGCCCATACATCCCCCCCCACGCAGCCCTGTGCCTGGAAGTCACCCTGAAGACGGCAGAGGATGGACCCGACCTGGAGATGCTGAGTGGGCAGGAGCGCGTGGCCCTGGCCAACCGCAAGCGGGAGTGTGGCAATGCCCACTACCAGCGTGCCGACTTTGTGCTGGCCGCCAATTCCTATGACCTGGCCATCAAGGCTATCACCTCCAACACCAAAG
Seq A exon
GTGACCAGTTACCTGGGGTGTGTGTATGCATTGCATGTGGAAGTCAGAGACAAATCAGGGAAGGCAGTTCTGTCTGTCCATTGTATGGAAGTGGTTCAAAACTCAGTTTGTCAGCCTTTGCAGCAAGGACGTTTTCCTGCTGAGCCATCTTGCCAGCCTGTAGGATGGCCAGACTTCTGCACCATCATTTGGGCCATAGAACGTTCTAGAATATTCCAGAATATAGACATATTTCCTGCCATCCATAACCTTCAGGTCAGTGGCTTCTTCCAGGTGGTGTATGTGTGGTCAGAAGCTAAGGCAGGAAAATGGACAATTGTAGTCTAGTAGTCTAGTCTGGGTTACATTGCAAGACACTTTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACGTGTTCACTTGCAGTGGGGGTCAGAGGTGAAAGCCTGGTGTTTTTCTCAGTTGCTGCCCACATTCTCTGACATGTCATTGGCCCCAGAGCTCTGACTAAGTGGCTGTGCCTGCCTCTCCCCAGTGCTGAGATTACACACATGCAGACTGCACTTGACTCAGAAGTGAGACCTGGAATCTGAATTTACATCCTCACACAAGCCCTTGGTGGCATGGGCCTGTCAGCTTAGCATGAGGGTGGCCATAGGAAGGTCAGGGGTTCAAGGTCACTCTCATCACTACATAGTGAGTTGGAGGCTATCCATAGCTGCTCCAGACCCTAATTGTGGTGTAAGGACTTGGGTGGCCTCTTAGGGGTCTGGTGGTGTAGACCCCAGGGGAGGGTGTGCCTGTTTCCCAGTGACCACTCCCCTACAG
Seq C2 exon
TGGACATGACTTGTGAGGAGGAAGAGGAGCTGCTACAGCTGAAGGTCAAGTGTCTGAACAACCTTGCGGCCTCACAGCTGAAGCTGGACCACTACCGAGCAGCTCTGCGCTCCTGTAGCCAGGTGCTGGAGCACCAGCCGGACAACATCAAGGCACTGTTCCGCAAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019428-Fkbp8:NM_010223:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=PD(19.1=23.0)
A:
NA
C2:
PF134321=TPR_16=PU(58.5=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGTCACCCTGAAGACG
R:
ACAGTGCCTTGATGTTGTCCG
Band lengths:
343-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: