BtaINT0063178 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43656626-43657591:-
Coord C1 exon
chr2:43657493-43657591
Coord A exon
chr2:43656750-43657492
Coord C2 exon
chr2:43656626-43656749
Length
743 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCATTCTTTTTTCTTCTCAGTCT
3' ss Score
9.13
Exon sequences
Seq C1 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCGCTCATGGAGAAACTCCTGGAGCAGGAAGCTCTGCTGGAGCAGCAGGACCCAAAG
Seq A exon
GTGAGATGTGCCAGGCTCCATCCGTGGTCTTTGTGTGAGCAGGGTCCTGATGGCTCCATGCAGGCATGCGGGCAAGAGGGGCAAAGAGCCAGGCTGGGACAGGATGCTTCAGTTCCTTCCTGGGCTTGGAAACTTGGCAGATGGATGCTTGTTCACTCATTACTTGTTGAGCCATCACTGGAATGAGGCTGAGAGCATGTATGTATAGCATTTCCAAGTTTATAGAGATAGGGAACTTAAATCTTGGTTGGATGTACAGAGAGACCATCCCAGGTAACCTGCTGACTGAACAGCGAAGTGTCCGGGAAGGAGAAGGCTTCACAGGGTCGCCATTGGTGCTGGCCCCGATAGGGGGAAGGCTTCGTAAGGAGGAATGGGAGAGGGCATTCTAGGGAGGGAAACAACACAGGTGAAGACCATGATGAAGGCTGGCAGGTCATAGTATTTTTCATCACGATCCTCTGCACTGAAGTGTAACAAGTCAGTGGCTATTACTAGCTGCCTTTTGCCATGGGATCTGGCCTTCCTCTGGCTGCCAGTTTTGTGTGTTCTTTGTGAAAAGGTTTTTGTTCCCAGAAACTTCCTAAGTTTTCTTCTGCTGAGCAGTGTGTTGGGATGGTGCTGTCTGTGTTTCAGACTGAGGCTGCTTGTTAGTCACAGAATGCTCAGACCCGTTTTGGATTTTCTCAGACCTCCAGTGGGTGTTGGTCTCATTAATCTCTGCCATTCTTTTTTCTTCTCAG
Seq C2 exon
TCTCCTTCCCACAAATCAAAAAGGCAGCAGCAAGAATTAATTGCCGAATTGAGAAGGCGGCAAGTTAAAGATAATAGACATGTATACGAAGGAAAAGATGGTGCCATTGAAGATATTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAAGAGGAAAATGAGCTGA
R:
CTGTGATAATATCTTCAATGGCACCA
Band lengths:
222-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]